2qpd: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
New page: left|200px<br /><applet load="2qpd" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qpd, resolution 3.25Å" /> '''An unexpected outcom...
 
OCA (talk | contribs)
No edit summary
Line 4: Line 4:


==Overview==
==Overview==
Cytochrome ba(3) oxidase is an integral membrane protein identified in the, thermophilic bacterium Thermus thermophilus. The enzyme has now been, expressed recombinantly and purified with a histidine tag. As such, it, crystallizes under similar conditions and in the same space group, (P4(3)2(1)2) as the native protein. A novel cryoprotection scheme is, described here to obtain high-resolution diffraction from these crystals, which involves soaking in a mixture of glycerol and ethylene glycol under, a layer of oil. The unit-cell parameters for these crystals are larger, than the native protein, apparently deriving from increased ordering of, the N-terminus and an internal loop (residues 495-500) in subunit I., Hence, compared with native cytochrome ba(3) oxidase, the recombinant, His-tagged protein is accommodated in an expanded but equally well ordered, lattice via an alternate set of specific intermolecular contacts. The, structure was refined against data to 2.3 angstroms resolution to an R, factor of 21.7% and an R(free) of 23.7%.
Cytochrome ba(3) oxidase is an integral membrane protein identified in the thermophilic bacterium Thermus thermophilus. The enzyme has now been expressed recombinantly and purified with a histidine tag. As such, it crystallizes under similar conditions and in the same space group (P4(3)2(1)2) as the native protein. A novel cryoprotection scheme is described here to obtain high-resolution diffraction from these crystals, which involves soaking in a mixture of glycerol and ethylene glycol under a layer of oil. The unit-cell parameters for these crystals are larger than the native protein, apparently deriving from increased ordering of the N-terminus and an internal loop (residues 495-500) in subunit I. Hence, compared with native cytochrome ba(3) oxidase, the recombinant His-tagged protein is accommodated in an expanded but equally well ordered lattice via an alternate set of specific intermolecular contacts. The structure was refined against data to 2.3 angstroms resolution to an R factor of 21.7% and an R(free) of 23.7%.


==About this Structure==
==About this Structure==
Line 15: Line 15:
[[Category: Thermus thermophilus]]
[[Category: Thermus thermophilus]]
[[Category: Chen, Y.]]
[[Category: Chen, Y.]]
[[Category: Fee, J.A.]]
[[Category: Fee, J A.]]
[[Category: Liu, B.]]
[[Category: Liu, B.]]
[[Category: Luna, V.M.]]
[[Category: Luna, V M.]]
[[Category: Stout, C.D.]]
[[Category: Stout, C D.]]
[[Category: CU1]]
[[Category: CU1]]
[[Category: CUA]]
[[Category: CUA]]
Line 38: Line 38:
[[Category: transport]]
[[Category: transport]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:44:50 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:41:09 2008''