Jmol/Visualizing large molecules: Difference between revisions
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===Displaying Alpha Carbons For A Subset Of Models=== | ===Displaying Alpha Carbons For A Subset Of Models=== | ||
Suppose that you want the alpha carbons for a subset of models in the published ensemble. You can get 16 models from the 184 models in 2hyn by taking either the first 16 | |||
:<tt>load models {1 16 1} =2hyn filter "*.ca"</tt> | |||
of by taking every 12th model plus the last model | |||
:<tt>load models {1 184 12} =2hyn filter "*.ca"</tt> | |||
==Biological Assemblies== | ==Biological Assemblies== | ||
However, [[biological unit]] assemblies generated from PDB files often exceed this limit by using redundant serial numbers for copied chains. Luckily, Jmol ignores the serial numbers in the PDB file, and can handle models with >100,000 atoms. | However, [[biological unit]] assemblies generated from PDB files often exceed this limit by using redundant serial numbers for copied chains. Luckily, Jmol ignores the serial numbers in the PDB file, and can handle models with >100,000 atoms. | ||
