Jmol/Visualizing large molecules: Difference between revisions
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===SV40 Capsid Alpha Carbons=== | ===SV40 Capsid Alpha Carbons=== | ||
*'''Generate The Capsid''': Go to the | *'''Generate The Capsid''': Go to the [http://watcut.uwaterloo.ca/cgi-bin/makemultimer/ MakeMultimer Server], and submit the [[PDB code]] '''1sva'''. | ||
*'''Free Java Memory''': You will need all of your default java memory, so first you should close any java-based programs. Close all browser windows or tabs that contain the Jmol applet. Close the Jmol application. | |||
*'''Display The Alpha Carbons''': After MakeMultimer displays the results page, right-click on the link '''1sva_mm1.pdb''', and copy the link location. It will be something like <nowiki>http://watcut.uwaterloo.ca/mm_static/tmpA-_B8L/1sva_mm1.pdb</nowiki>, but this address is temporary and later the file will be deleted from the server. In the Jmol application (see above for instructions), enter this command | |||
:<tt>load http://watcut.uwaterloo.ca/mm_static/tmpA-_B8L/1sva_mm1.pdb filter "*.ca" | |||
