Jmol/Visualizing large molecules: Difference between revisions
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It may take about a minute for the first command to work. After the capsid appears, enter the second command -- it may take half a minute. The resulting display will include 123,420 atoms, which is about the maximum that Jmol can display in the default java memory. | It may take about a minute for the first command to work. After the capsid appears, enter the second command -- it may take half a minute. The resulting display will include 123,420 atoms, which is about the maximum that Jmol can display in the default java memory. | ||
If the SV40 full capsid display fails, try the half-capsid model (also available from a link at ViperDB). | If the SV40 full capsid display fails, try the half-capsid model (also available from a link at ViperDB). You will probably want to look at the half capsid anyway, as that shows the inside better than using Jmol's slab command. | ||
A smaller virus capsid is human hepatitis B, [[2g34]]. Its half-capsid (17,640 atoms) is displayed near the top of this page. | |||
