Sandbox Reserved 323: Difference between revisions

==Introduction==

[[Peroxisome Proliferator-Activated Receptors]] (PPARs) consist of a superfamily of nuclear hormone receptors that act as transcription factors. PPARs are ligand-activated transcription factors that govern numerous biological processes, including energy metabolism, cell proliferation and inflammation <ref name="PPAR1">PMID:12007538</ref>. PPAR-alpha is one of the three PPAR isotypes (alpha, beta and gamma), which can be distinguished by its activating ligand and its specific PPAR-regulated genes to which it provides transcriptional control.  PPAR-alpha has an important role in the regulation of nutrient metabolism, including fatty acid oxidation, gluconeogenesis and amino acid metabolism <ref name="PPAR2">PMID:10359558</ref>. PPAR-alpha is predominately expressed in tissues with high rates of mitochondrial beta oxidation, such as liver, heart, muscle, kidney and cells of the arterial wall <ref name="PPAR3">PMID:11135616</ref>. Various activating molecules of PPAR alpha have consisted of fibrates, fatty acids and eicosanoids, 15-d Ptg (15-Deoxy-Delta Prostaglandin-J2) and oxidized fatty acids. As PPAR-alpha (as well as the other associated isotypes) has an important role in the regulation of energy metabolism, and as its activity can be manipulated by various drugs, there is an increasing interest in the potential connection between PPAR alpha and obesity <ref name="PPAR1"/>.  

==Structure==

<Structure load='1k7l' size='325' frame='true' align='left' caption='Human PPARα' />

<scene name='Sandbox_Reserved_323/1k7l/1'>PPAR alpha</scene> structure shares common characteristics with the other isoforms in this nuclear receptor superfamily, as it displays five distinguishable domains designated the A/B, C, D, E and F domains. The A/B domain, on the N-terminus of PPAR-alpha, contains an activation function region (AF-1), which has a low level of basal transcriptional activity and functions independently of ligand-binding. <scene name='Sandbox_Reserved_323/1k7l/6'>The DNA binding domain</scene> (C) contains two very highly conserved zinc finger motifs and architectural elements capable of sequence-specific binding to DNA <ref name="PPAR4">PMID:10529898</ref>. A <scene name='Sandbox_Reserved_323/1k7l/9'>flexible hinge region</scene> (D) connects the DNA binding domain to the ligand-binding domain (E). The ligand-binding domain in the human PPAR alpha protein contains the activation function-2 (AF-2) region composed of two alpha helices flanking one four-sided beta sheet. Following ligand interaction, the AF-2 domain undergoes a conformational change which promotes the hydrogen bonding between <scene name='Sandbox_Reserved_323/1k7l/10'>Tyr-314 and Tyr-464</scene>, as well as the formation of the “charge clamp” between <scene name='Sandbox_Reserved_323/1k7l/8'>Lys-292 and Glu-462</scene>.<ref name="PPAR4"/>

==Ligand Interactions==

Within the ligand-binding domain (LBD) of PPAR alpha is a large pocket of approximately 1,400 Å, into which a small molecule ligand is bound. The ligand adopts a conformation within the receptor that allows an acidic head group to form hydrogen bonds with Tyr-314 and Tyr-464 on the AF-2 helix <ref name="PPAR7">PMID:11698662</ref>. These interactions stabilize the AF-2 helix in a conformation that generates the “charge clamp.” A major determinant of selectivity between the PPAR isotypes alpha and beta is the substitution or Tyr-314 in PPAR alpha for His-323 in PPAR beta. Although all three PPAR subtypes bind to polyunsaturated fatty acids with micromolar affinity, only PPAR alpha has been observed to bind a wide range of saturated fatty acids <ref name="PPAR7"/>.

==Function==

The common functionality between the three isoforms consists of binding with a heterodimeric protein, Retinoid X Receptor (RXR) <ref name="PPAR8">PMID:11457759</ref><ref name="PPAR9">PMID:10947870</ref>, to regulate gene expression by recognizing specific DNA elements known as Peroxisome Proliferator Response Elements (PPREs). The heterodimeric transcription factor complex then binds to cognate sequences in promoter regions of target genes involved in the catabolism of fatty acids <ref name="PPAR9"/>. Transcriptional activation or repression of the target gene is more complex than simple binding of the PPAR/RXR heterodimer, there is an initial association with transcriptional corepressors and recruitment of activators that occurs in association to ligand activation <ref name="PPAR2"/><ref name="PPAR7"/><ref name="PPAR9"/>.  

PPAR-alpha is involved in regulating the expression of genes involved in the peroxisomal and mitochondrial Beta oxidation pathways such as Acyl-CoA oxidase, Enol-Co dehydrogenase/hydratase, Malic enzyme and various others <ref name="PPAR9"/>. Activated PPAR-alpha contributes to increased breakdown of triglycerides and fatty acids, increased uptake of cellular fatty acids, and reduction in triglyceride and fatty acid synthesis. PPAR alpha displays the greatest amount of activity in the post-absorptive state or fasting state within animals. In the liver, fatty acids are oxidized to acetyl-CoA and/or ketone bodies, in which both processes are strongly stimulated by the expression of PPAR alpha <ref name="PPAR8"/>. Since fatty acids act as ligands of PPAR alpha, it is possible that fatty acids liberated from adipose tissue can stimulate their own metabolism by activating PPAR alpha receptors.  

All three isoforms of PPAR are becoming more and more of an interest in scientific communities as possible mechanisms of treatment in various diseases and conditions such as Diabetes Mellitus and obesity.  Fibrates, which include fenofibrate, bind with PPAR alpha in high affinity and act to lower plasma triglyceride levels and increase high density lipoprotein levels<ref name="PPAR10">PMID:10839530</ref>. Therefore, fibrates may also have an anti-diabetic effect as a consequence of their hypolipidaemic action. PPAR alpha may also have a hand in the prevention of atherosclerosis by decreasing the plasma concentrations of pro-atherosclerosis proteins such as fibrinogen and C-reactive protein <ref name="PPAR10"/>. Much of the current research involved with PPARs is directed towards the identification of highly specific agonists and antagonists for treatment of numerous metabolic diseases and conditions.   

=Additional Resources=

* See: [[PPAR-gamma]] for additional information on another isoform of PPAR

* See: [[Diabetes Mellitus]] for additional information on the pathophysiology of Diabetes

=References=

<references/>