DNA ligase: Difference between revisions
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===ATP-dependent LigD=== | ===ATP-dependent LigD=== | ||
[[3p4h]] – LigD N-terminal – Candidatus korarchaeum cryptofilum<br /> | [[3p4h]] – LigD N-terminal – ''Candidatus korarchaeum cryptofilum''<br /> | ||
[[3gde]] – LigD – Archaeoglobus fulgidus<br /> | [[3gde]] – LigD – ''Archaeoglobus fulgidus''<br /> | ||
[[2hiv]] – SsLigD – Sulfolobus solfataricus<br /> | [[2hiv]] – SsLigD – ''Sulfolobus solfataricus''<br /> | ||
[[2hix]] - SsLigD + ATP<br /> | [[2hix]] - SsLigD + ATP<br /> | ||
[[2cfm]] - LigD + AMP – Pyrococcus furiosus<br /> | [[2cfm]] - LigD + AMP – ''Pyrococcus furiosus''<br /> | ||
[[2fao]] - PaLigD polymerase domain – Pseudomonas aeruginosa<br /> | [[2fao]] - PaLigD polymerase domain – ''Pseudomonas aeruginosa''<br /> | ||
[[2faq]], [[ 2far]] - PaLigD polymerase domain + ATP + Mn<br /> | [[2faq]], [[ 2far]] - PaLigD polymerase domain + ATP + Mn<br /> | ||
[[1a0i]] – LigD + ATP – Bacteriophage T7 | [[1a0i]] – LigD + ATP – Bacteriophage T7 | ||
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===NAD+-dependent LigD=== | ===NAD+-dependent LigD=== | ||
[[3jsl]], [[ 3jsn]] - LigD adenylation domain – Staphylococcus aureus<br /> | [[3jsl]], [[ 3jsn]] - LigD adenylation domain – ''Staphylococcus aureus''<br /> | ||
[[3ba8]], [[ 3ba9]], [[ 3baa]], [[ 3bab]], [[ 3bac]] - EfLigD adenylation domain + inhibitor – Enterococcus faecalis<br /> | [[3ba8]], [[ 3ba9]], [[ 3baa]], [[ 3bab]], [[ 3bac]] - EfLigD adenylation domain + inhibitor – ''Enterococcus faecalis''<br /> | ||
[[1ta8]], [[ 1tae]] - EfLigD adenylation domain<br /> | [[1ta8]], [[ 1tae]] - EfLigD adenylation domain<br /> | ||
[[1zau]] - LigD adenylation domain – Mycobacterium tuberculosis<br /> | [[1zau]] - LigD adenylation domain – ''Mycobacterium tuberculosis''<br /> | ||
[[1v9p]], [[ 1dgs – LigD – Thermus filiformis<br /> | [[1v9p]], [[ 1dgs]] – LigD – ''Thermus filiformis''<br /> | ||
[[1b04]] – LigD adenylation domain (mutant) – Geobacillus stearothermophilus | [[1b04]] – LigD adenylation domain (mutant) – ''Geobacillus stearothermophilus'' | ||
===LigD=== | ===LigD=== | ||
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[[2q2t]] – CvLigD + DNA + AMP + CMP – Chlorella virus<br /> | [[2q2t]] – CvLigD + DNA + AMP + CMP – Chlorella virus<br /> | ||
[[2q2u]], [[ 1p8l]], [[ 1fvi]] - CvLigD + DNA + mononucleotide<br /> | [[2q2u]], [[ 1p8l]], [[ 1fvi]] - CvLigD + DNA + mononucleotide<br /> | ||
[[2owo]] – LigD + DNA + AMP + CMP – Escherichia coli<br /> | [[2owo]] – LigD + DNA + AMP + CMP – ''Escherichia coli''<br /> | ||
[[3qwu]] – LigD – Aquifex aeolicus<br /> | [[3qwu]] – LigD – ''Aquifex aeolicus''<br /> | ||
[[3pn1]] – LigD adenylation domain + inhibitor – Haemophilus influenzae<br /> | [[3pn1]] – LigD adenylation domain + inhibitor – ''Haemophilus influenzae''<br /> | ||
[[1l7b]] – LigD BRCT domain – Thermus thermophilus | [[1l7b]] – LigD BRCT domain – ''Thermus thermophilus'' - NMR | ||
===Mamalian LigD I=== | ===Mamalian LigD I=== | ||
