Ribozyme: Difference between revisions
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== 3D Structures of Ribozyme == | == 3D Structures of Ribozyme == | ||
===Hepatitis delta virus RZ=== | |||
[[3nkb]] – HDVRZ + DNA/RNA – Hepatitis delta virus<BR /> | |||
[[1ato]] – HDVRZ]] - NMR<BR /> | |||
[[2oih]] - HDVRZ + U1 small nuclear ribonucleoprotein A<BR /> | |||
[[1vc5]] - HDVRZ + U1 small nuclear ribonucleoprotein A (mutant) <BR /> | |||
[[2oj3]], [[1sj3]], [[1sj4]], [[1sjf]], [[1vbx]], [[1vby]], [[1vbz]], [[1vc0]] - HDVRZ (mutant) + U1 small nuclear ribonucleoprotein A<BR /> | |||
[[1vc6]], [[1vc7]], [[1cx0]], [[1drz]]- HDVRZ (mutant) + U1 small nuclear ribonucleoprotein A (mutant) | |||
===glmS RZ=== | |||
[[3l3c]], [[3g8s]], [[3g8t]], [[3g96]], [[3g9c]] – glmS RZ + RNA + U1 small nuclear ribonucleoprotein A<BR /> | |||
[[2nz4]] - glmS RZ + substrate RNA 13-mer+ U1 small nuclear ribonucleoprotein A (mutant) <BR /> | |||
[[3b4a]], [[3b4b]], [[3b4c]], [[2z74]], [[2z75]] – Tt-glmS RZ (mutant) + glmS RZ substrate RNA + glmS – Thermoanaerobacter tengcongensis<BR /> | |||
[[2ho6]], [[2ho7]] - Tt-glmS RZ + glmS RZ substrate RNA<BR /> | |||
[[2gcs]], [[2h0s]], [[2h0x]], [[2h0z]] - Tt-glmS RZ + Tt-glmS RZ amino RNA inhibitor<BR /> | |||
[[2gcv]], [[2h0w]] - Tt-glmS RZ + Tt-glmS RZ product oligonucleotide | |||
===Hairpin RZ=== | |||
[[3i2q]], [[3i2r]], [[3i2s]], [[3i2u]], [[3cqs]], [[2d2k]], [[2d2l]] – Hairpin RZ<BR /> | |||
[[3gs1]], [[3gs5]], [[3gs8]], [[2bcy]], [[2bcz]], [[2fgp]], [[1x9c]], [[1x9k]] - Hairpin RZ (mutant) <BR /> | |||
[[3cr1]] – Hairpin RZ + RNA<BR /> | |||
[[2k63]], [[2k64]], [[2k65]], [[2k66]] - Hairpin RZ 29-mer – NMR<BR /> | |||
[[3b58]], [[3b5a]], [[3b5f]], [[3b5s]], [[3b91]], [[3bbi]], [[3bbk]], [[3bbm]] - Hairpin RZ 29-mer + RNA<BR /> | |||
[[2npy]], [[2npz]] - Hairpin RZ + RZ domain linking strand<BR /> | |||
[[2p7d]], [[2p7e]], [[2p7f]], [[2oue]], [[1m5o]], [[1m5p]], [[1m5v]] - Hairpin RZ strands I, II, III +substrate strand – Tobacco ringspot virus<BR /> | |||
[[1m5k]] - Hairpin RZ + RNA inhibitor substrate + U1 small nuclear ribonucleoprotein A | |||
===Hammerhead RZ=== | |||
[[1nyi]], [[1q29]], [[379d]], [[359d]], [[299d]], [[300d]], [[301d]], [[1mme]], [[1hmh]] - Hammerhead RZ<BR /> | |||
[[1rmn]] - Hammerhead RZ – fluorescence measurements<BR /> | |||
[[2ro2]], [[2rpk]] – Hammerhead RZ domain I<BR /> | |||
[[3czw]], [[3d0m]] - Hammerhead RZ shorter strands<BR /> | |||
[[2qus]], [[2quw]] - Hammerhead RZ (mutant) <BR /> | |||
[[2oeu]], [[2goz]] - Hammerhead RZ + RNA | |||
===Leadzyme=== | |||
[[2ldz]], [[1ldz]], [[1nuj]], [[1nuv]], [[429d]] – Leadzyme – NMR<BR /> | |||
===Various RZ=== | |||
[[1b36]] – RZ loop B]] - NMR<BR /> | |||
[[2l5z]], [[1e4p]] – 26-mer of VS RZ – Neurospora – NMR<BR /> | |||
[[1yn1]], [[1yn2]], [[1tbk]], [[1tjz]], [[1hwq]] - VS RZ stem-loop V – NMR<BR /> | |||
[[3hhn]] – Class I ligase RZ + U1 small nuclear ribonucleoprotein A<BR /> | |||
[[3cul]], [[3cun]] – Aminoacyl tRNA synthetase RZ 92-mer + U1 small nuclear ribonucleoprotein A<BR /> | |||
[[2r8s]] – RZ P4-P6 domain + antibody – mouse<BR /> | |||
[[2cd1]], [[2cd5]], [[1xsg]], [[1f6x]], [[1f78]], [[1f7f]], [[1f7h]] – RNase P RZ P4 domain<BR /> | |||
[[2cd3]], [[2cd6]], [[1xsh]], [[1xst]], [[1xsu]], [[1f6z]], [[1f79]], [[1f7g]], [[1f7i]] - RNase P RZ P4 domain (mutant) <BR /> | |||
[[2oiu]] – L1 RZ RNA ligase<BR /> | |||
[[2hoj]], [[2hok]], [[2hol]], [[2hom]], [[2hoo]], [[2hop]] – THI-box riboswitch + thiamine pyrophosphate analog<BR /> | |||
[[2f88]] – RZ domain 5 – Pyaiella litorralis<BR /> | |||
[[1ykq]] – Diels-Alder RZ<BR /> | |||
[[1ykv]], [[1yls]] - Diels-Alder RZ + reaction products<BR /> | |||
[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | |||
[[1x8w]] – TtRZ – Tetrahymena thermophilia<BR /> | |||
[[1grz]] – TtRZ (mutant) <BR /> | |||
[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | |||
[[1hr2]] - TtRZ P4-P6 domain (mutant) <BR /> | |||
[[488d]] – RZ + RNA products | |||
