Homology modeling servers: Difference between revisions

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''The list below is incomplete, and may not include some of the best servers, nor does it include assessments of server performance. Please help by adding additional servers.''
''The list below is incomplete, and may not include some of the best servers, nor does it include assessments of server performance. Please help by adding additional servers.''


* [http://swissmodel.expasy.org/ SWISS-MODEL] provides a free, fully-automated homology modeling service. Using the ''Automated Mode'', you submit a protein sequence. When the [[PDB]] contains an empirically-determined structure with sufficient sequence identity with your target sequence, it will be used as a template. The resulting homology model will be constructed automatically.
* [http://swissmodel.expasy.org/ SWISS-MODEL] provides a free, fully-automated homology modeling service. Using the ''Automated Mode'', you submit a protein sequence. When the [[PDB]] contains an empirically-determined structure with sufficient sequence identity with your query sequence, it will be used as a template. The resulting homology model will be constructed automatically.


* [http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] allows users to calculate comparative models on demand.
* [http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] allows users to calculate comparative models on demand.