User:Wayne Decatur/kink-turn motif: Difference between revisions
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* ''A. fulgidus'' small ribonucleoprotein particle box C/D RNA has a kink-turn that is bound by L7Ae ([[1rlg]])<ref>PMID: 15130473</ref> has a kink turn. | * ''A. fulgidus'' small ribonucleoprotein particle box C/D RNA has a kink-turn that is bound by L7Ae ([[1rlg]])<ref>PMID: 15130473</ref> has a kink turn. | ||
* ''Pyrococcus furiosus'' small ribonucleoprotein particle box H/ACA RNA ([[2hvy]]<ref>PMID: 16943774</ref>,[[3hax]],[[3hay]]<ref>PMID: 19481523</ref>) has a kink turn that is bound directly by L7ae in a complex of several proteins. | * ''Pyrococcus furiosus'' small ribonucleoprotein particle box H/ACA RNA ([[2hvy]]<ref>PMID: 16943774</ref>,[[3hax]],[[3hay]]<ref>PMID: 19481523</ref>) has a kink turn that is bound directly by L7ae in a complex of several proteins. | ||
* 'Azoarcus'' group I intron: | * ''Azoarcus'' group I intron: | ||
:*''Azoarcus'' group I intron ([[1u6b]], [[1zzn]], [[3bo2]], [[3bo3]], [[3bo4]], and [[3iin]])<ref>PMID: 15175762</ref><ref>PMID: 16141079</ref><ref> PMID:18408159</ref><ref>PMID:20145044</ref> has a 'reverse' kink-turn. Overlay of the ''Azoarcus'' group I intron reverse kink-turn with a typical one (Kt-7) clearly illustrates the difference. '''PUT A SCENE HERE OF ALIGNMENT OF THIS WITH KT-7 with each Kt colored differently''' | :*''Azoarcus'' group I intron ([[1u6b]], [[1zzn]], [[3bo2]], [[3bo3]], [[3bo4]], and [[3iin]])<ref>PMID: 15175762</ref><ref>PMID: 16141079</ref><ref> PMID:18408159</ref><ref>PMID:20145044</ref> has a 'reverse' kink-turn. Overlay of the ''Azoarcus'' group I intron reverse kink-turn with a typical one (Kt-7) clearly illustrates the difference. '''PUT A SCENE HERE OF ALIGNMENT OF THIS WITH KT-7 with each Kt colored differently''' | ||
:* <scene name='User:Wayne_Decatur/kink-turn_motif/3cc2withkiturns/7'>The location of the single kink-turn</scene> highlighted within the solved structure of the''Azoarcus'' group I intron. | :* <scene name='User:Wayne_Decatur/kink-turn_motif/3cc2withkiturns/7'>The location of the single kink-turn</scene> highlighted within the solved structure of the''Azoarcus'' group I intron. | ||
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* [[Large Ribosomal Subunit of Haloarcula|The Large Ribosomal Subunit]] | * [[Large Ribosomal Subunit of Haloarcula|The Large Ribosomal Subunit]] | ||
* [[Ribozyme]] | * [[Ribozyme]] | ||
* [[Group I intron]] | |||
* [[Azoarcus group I intron]] | |||
* [[1go1]], [[1go0]], [[1w3e]] and [[1h7m]] – the ''Thermococcus celer'' ribosomal protein L30<ref>PMID: 12627951</ref><ref>PMID: 12824494</ref> | * [[1go1]], [[1go0]], [[1w3e]] and [[1h7m]] – the ''Thermococcus celer'' ribosomal protein L30<ref>PMID: 12627951</ref><ref>PMID: 12824494</ref> | ||
* A-minor motif | * A-minor motif | ||
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[[Category: tunnel]] | [[Category: tunnel]] | ||
[[Category: ribozyme]] | [[Category: ribozyme]] | ||
[[Category: ribosome]] | |||
[[Category: Rna-rna]] | [[Category: Rna-rna]] | ||
[[Category: 50S]] | [[Category: 50S]] | ||
