Replication Termination Protein: Difference between revisions

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<scene name='Rtp_and_Tus_DNA_Binding/Wingdown/1'>Wing-down</scene>: Contacts with phosphate backbone of downstream DNA  
<scene name='Rtp_and_Tus_DNA_Binding/Wingdown/1'>Wing-down</scene>: Contacts with phosphate backbone of downstream DNA  
<Structure load='Lol1.pdb' size='400' color='white'/>




<scene name='Replication_Termination_Protein/Binding/1'>Residues binding to DNA</scene>
<scene name='Replication_Termination_Protein/Binding/1'>Residues binding to DNA</scene>


Residues binding in both RTP monomers: Gln15, Arg16, Leu35, Asn53, His54, Thr55, Tyr58, Arg59, His62, gln72 (RED)
Residues that bind in both monomers: Red
Residues binding in only wing down position: Lys14, Tyr33, Lys77, Gln83, Val86 (BLUE)
Residues binding in only wing up position: Thr9, Lys36, Glu56 (GREEN)


<Structure load='Lol1.pdb' size='400' color='white'/>
Residues that bind only in wing-up: Green
 
Residues that bind only in wing-down: Blue
 
{| class="wikitable"
|-
! Both monomers
! Unit
! Binding
|-
| Lys14
| Wing-down
| Phosphate(13)
|-
| Gln15
| Both
| Phosphate(14)
|-
| Arg16
| Both
| Phosphate(13)
|-
| Tyr33
| Wing-down
| Phosphate(3)
|-
| Leu35
| both
| Phosphate(4)
|-
| Lys36
| Wing-up
| Sugar(3)
|-
| Asn53
| Both
| Phosphate(14)
|-
| His54
| Both
| Guanine(5)
|-
| Thr55
| Both
| Thymine(15)
|-
| Glu56
| Wing-up
| Phosphate(13)
|-
| Tyr58
| Both
| Phosphate(4/5)
|-
| Arg59
| Both
| Guanine(14)
|-
| His62
| Both
| Phosphate(5)
|-
| Gln72
| Both
| Phosphate(5)
|-
| Lys77
| Wing-down
| Phosphate(3)
|-
| Gln83
| Wing-down
| Sugar(3)
|-
| Val86
| Wind-down
| Phosphate(4)
|-
|}
Retrieved from "https://proteopedia.org/Replication_Termination_Protein"