CBI Molecules: Difference between revisions

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It's great to build on a previous entry, but you must leave the earlier one intact and make a copy that you improve and mark as new. Later we will retain the new one with a merged author list.

Fall ~~2010~~: New entries are due 12/10/10. Please append the designation (new Fall ~~2010~~) to your new entries.

Fall 2011: New entries are due 12/16/11. Please append the designation (new Fall 2011) to your new entries.

Spring 2011: New entries are due 5/4/11. Please append the designation (new Spring 2011) to your new entries

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==Instructions==

'''Congratulations to the prize-winning CBI molecules noted above! These also provide great examples to follow. Another prize for best CBI ~~Molecules~~ page and/or scene will be awarded in ~~spring 2011~~!'''

'''Congratulations to the prize-winning CBI molecules noted above! These also provide great examples to follow. Another prize for best CBI Molecule page and/or scene will be awarded in summer 2012!'''

Choose a molecule that is part of your research project. If someone in your group has already made a page for your research molecule, you can improve on that previous entry. You must leave the previously created page intact and make a copy that you improve and mark as new. Later we will retain the new one with a merged author list.

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3. Follow the format of the sample CBI molecule page [[Molecular Playground/Bacterial Chemotaxis Receptors]]. Easiest way to do this is to copy this page (in editing mode), paste it into your sandbox page, keep the first paragraph about CBI molecules, and then edit to describe and display your molecule. Your goal is to make this an interesting, nontechnical description of the molecule. If multiple people in one group work on the same molecule, you can each make different scenes for the same CBI molecule and each describe them on the same proteopedia page. Talk with each other about your plans so you are not duplicating efforts.

4. Complete above steps by 12/1/11, and add a link to your sandbox page at: Sandbox CBI (CBI Molecules in Progress).

4. Create an attractive scene for your molecule: use the scene authoring tools in the edit mode to create the view you like, then copy the wiki text into your window.

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6. When you are happy with your sandbox page, make yourself a permanent Proteopedia page, which will be editable by others. Enter "Molecular Playground/your molecule" (omit quotes) in the search box, then follow the instructions to create a new page with this title. Copy the content of your sandbox to this new page.

7. When you have finished the final version of your page and scene, edit this CBI Molecules page to add a listing and link for your molecule, following the examples above, and be sure to mark it as NEW FALL 2011. If you are improving a previously created page, leave the old one intact and make a copy that you improve and mark as new. Later we will retain the new one with a merged author list. When multiple authors contribute to a Molecular Playground page, please indicate your scene with your initials. ~~It would be great to~~ link the lab names to web pages too.

7. When you have finished the final version of your page and scene, edit this CBI Molecules page to add a listing and link for your molecule, following the examples above, and be sure to mark it as NEW FALL 2011. If you are improving a previously created page, leave the old one intact and make a copy that you improve and mark as new. Later we will retain the new one with a merged author list. When multiple authors contribute to a Molecular Playground page, please indicate your scene with your initials. Please link the lab names to web pages too.

==Links to HELP pages==

The main list of help resources is linked to the Main Page:

http://www.proteopedia.org/wiki/index.php/Help:Contents

Videos showing how to use Proteopedia:

http://www.proteopedia.org/wiki/index.php/Proteopedia:Video_Guide

(Sometimes slow -- if you pause the video and wait awhile it will download and then you can play it without interruptions)

http://www.proteopedia.org/wiki/index.php/Proteopedia:DIY:Scenes

gives succinct step by step instructions on how to create a molecular scene.

A powerpoint-like set of slides that walk a user through the process of creating a new page and new molecular scene/green link.

http://www.proteopedia.org/wiki/images/1/1b/2009_07_13_Proteopedia_Workshop.pdf

http://www.proteopedia.org/wiki/index.php/Proteopedia:Guidelines_for_Ethical_Writing

Note section about images with links to examples of images re-used with explicit permission.

CBI Molecules: Difference between revisions

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@@ Line 6: / Line 6: @@
 It's great to build on a previous entry, but you must leave the earlier one intact and make a copy that you improve and mark as new.  Later we will retain the new one with a merged author list.
-Fall 2010: New entries are due 12/10/10. Please append the designation (new Fall 2010) to your new entries.
+Fall 2011: New entries are due 12/16/11. Please append the designation (new Fall 2011) to your new entries.
 Spring 2011: New entries are due 5/4/11. Please append the designation (new Spring 2011) to your new entries
@@ Line 164: / Line 164: @@
 ==Instructions==
-'''Congratulations to the prize-winning CBI molecules noted above! These also provide great examples to follow. Another prize for best CBI Molecules page and/or scene will be awarded in spring 2011!'''
+'''Congratulations to the prize-winning CBI molecules noted above! These also provide great examples to follow. Another prize for best CBI Molecule page and/or scene will be awarded in summer 2012!'''
 Choose a molecule that is part of your research project. If someone in your group has already made a page for your research molecule, you can improve on that previous entry. You must leave the previously created page intact and make a copy that you improve and mark as new.  Later we will retain the new one with a merged author list.
@@ Line 173: / Line 173: @@
 . Follow the format of the sample CBI molecule page [[Molecular Playground/Bacterial Chemotaxis Receptors]]. Easiest way to do this is to copy this page (in editing mode), paste it into your sandbox page, keep the first paragraph about CBI molecules, and then edit to describe and display your molecule. Your goal is to make this an interesting, nontechnical description of the molecule. If multiple people in one group work on the same molecule, you can each make different scenes for the same CBI molecule and each describe them on the same proteopedia page. Talk with each other about your plans so you are not duplicating efforts.
+. Complete above steps by 12/1/11, and add a link to your sandbox page at: Sandbox CBI (CBI Molecules in Progress).
 . Create an attractive scene for your molecule: use the scene authoring tools in the edit mode to create the view you like, then copy the wiki text into your window.
@@ Line 180: / Line 182: @@
 . When you are happy with your sandbox page, make yourself a permanent Proteopedia page, which will be editable by others. Enter "Molecular Playground/your molecule" (omit quotes) in the search box, then follow the instructions to create a new page with this title. Copy the content of your sandbox to this new page.
-. When you have finished the final version of your page and scene, edit this CBI Molecules page to add a listing and link for your molecule, following the  examples above, and be sure to mark it as NEW FALL 2011. If you are improving a previously created page, leave the old one intact and make a copy that you improve and mark as new.  Later we will retain the new one with a merged author list. When multiple authors contribute to a Molecular Playground page, please indicate your scene with your initials. It would be great to link the lab names to web pages too.
+. When you have finished the final version of your page and scene, edit this CBI Molecules page to add a listing and link for your molecule, following the  examples above, and be sure to mark it as NEW FALL 2011. If you are improving a previously created page, leave the old one intact and make a copy that you improve and mark as new.  Later we will retain the new one with a merged author list. When multiple authors contribute to a Molecular Playground page, please indicate your scene with your initials. Please link the lab names to web pages too.
+==Links to HELP pages==
+The main list of help resources is linked to the Main Page:
+http://www.proteopedia.org/wiki/index.php/Help:Contents
+Videos showing how to use Proteopedia:
+http://www.proteopedia.org/wiki/index.php/Proteopedia:Video_Guide
+(Sometimes slow -- if you pause the video and wait awhile it will download and then you can play it without interruptions)
+http://www.proteopedia.org/wiki/index.php/Proteopedia:DIY:Scenes
+gives succinct step by step instructions on how to create a molecular scene.
+A powerpoint-like set of slides that walk a user through the process of creating a new page and new molecular scene/green link.
+http://www.proteopedia.org/wiki/images/1/1b/2009_07_13_Proteopedia_Workshop.pdf
+http://www.proteopedia.org/wiki/index.php/Proteopedia:Guidelines_for_Ethical_Writing
+Note section about images with links to examples of images re-used with explicit permission.