User:Wayne Decatur/Homology Modeling: Difference between revisions
From Proteopedia
Jump to navigationJump to search
m edited I-TASSER JoVE video link |
mNo edit summary |
||
| Line 31: | Line 31: | ||
*** [http://web.cbio.uct.ac.za/~yves/nasp/ NASP] is a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments. See the companion [http://bioinformatics.oxfordjournals.org/content/27/17/2443.short?rss=1 article]. | *** [http://web.cbio.uct.ac.za/~yves/nasp/ NASP] is a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments. See the companion [http://bioinformatics.oxfordjournals.org/content/27/17/2443.short?rss=1 article]. | ||
**3D Structure | **3D Structure | ||
*** [http://iimcb.genesilico.pl/modernaserver/ ModeRNA server] is an online tool for RNA 3D structure modeling by the comparative approach, based on a template RNA structure and a user-defined target-template sequence alignment. Related to this is [http://iimcb.genesilico.pl/moderna/ | *** [http://iimcb.genesilico.pl/modernaserver/ ModeRNA server] is an online tool for RNA 3D structure modeling by the comparative approach, based on a template RNA structure and a user-defined target-template sequence alignment. Related to this is [http://iimcb.genesilico.pl/moderna/ ModeRNA], which is a program for comparative modeling of RNA 3D structures. It requires a pairwise sequence alignment and a structural template to generate a 3D structural model of the target RNA sequence and allows for nucleotide modifications. See the companion [http://bioinformatics.oxfordjournals.org/content/27/17/2441.short?rss=1 article] for the server. | ||
*Nucleic Acid-protein modeling | *Nucleic Acid-protein modeling | ||
**The [http://iimcb.genesilico.pl/index.php/software.html software page at the Bujnicki Laboratory website] hosts software for determining two medium-resolution, knowledge-based potentials for scoring protein-RNA models obtained by docking. See the companion [http://www.biomedcentral.com/1471-2105/12/348 article]. | **The [http://iimcb.genesilico.pl/index.php/software.html software page at the Bujnicki Laboratory website] hosts software for determining two medium-resolution, knowledge-based potentials for scoring protein-RNA models obtained by docking. See the companion [http://www.biomedcentral.com/1471-2105/12/348 article]. | ||
