Student Projects for UMass Chemistry 423 Spring 2012: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older editNewer edit →
No edit summary
No edit summary
Line 6: Line 6:
'''1. Topics and 1 green scene: Sandbox pages displaying initial structure and one green scene due by end of class workshop 2/??/12'''
'''1. Topics and 1 green scene: Sandbox pages displaying initial structure and one green scene due by end of class workshop 2/??/12'''
:'''Teams''' of 4 people will be assigned, to include both chemistry and chemical engineering majors on most teams. You may request one teammate by emailing the TA by noon Feb 16.  
:'''Teams''' of 4 people will be assigned, to include both chemistry and chemical engineering majors on most teams. You may request one teammate by emailing the TA by noon Feb 16.  
:Once you know your team assignment, select an available '''topic''' (not already chosen by another team) from the [[#Topic List|Topic List]] or find a simple protein-ligand complex (eg protein-drug, nucleic acid-drug, or protein-DNA) with a known structure in the pdb that interests your team.  For any topic not on the list, be sure that it does not already have a detailed Proteopedia page and email Prof Thompson to get approval: send the pdb code for the complex and briefly explain the disease connection or why it is interesting. Add your topic to the team list at [[Sandbox423]].
:Once you know your team assignment, select an available '''topic''' (not already chosen by another team); see our course website for suggestions and guidelines to find a simple protein-ligand complex (eg protein-drug, nucleic acid-drug, or protein-DNA) with a known structure in the pdb that interests your team.  For any topic not on the list, be sure that it does not already have a detailed Proteopedia page and email Prof Thompson to get approval: send the pdb code for the complex and briefly explain the disease connection or why it is interesting. Add your topic to the team list at [[Sandbox423]].


:'''Start your assigned sandbox page''': Find the pdb id for your protein-ligand complex in the Protein Data Bank. In your assigned sandbox page click"edit this page" (top) and follow the directions to insert your rotating structure on your page. Describe and illustrate with a green scene the secondary structure of your protein.
:'''Start your assigned sandbox page''': Find the pdb id for your protein-ligand complex in the Protein Data Bank. In your assigned sandbox page click"edit this page" (top) and follow the directions to insert your rotating structure on your page. Describe and illustrate with a green scene the secondary structure of your protein.
Line 37: Line 37:


'''3. In-class presentations on assigned dates.'''
'''3. In-class presentations on assigned dates.'''
==Topic List==




Retrieved from "https://proteopedia.org/Student_Projects_for_UMass_Chemistry_423_Spring_2012"