Interface analysis servers: Difference between revisions
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Eric Martz (talk | contribs) New page: {{Stub}} The purpose of this article is to list and evaluate servers that analyze interfaces within molecular models, such as protein-protein and ligand-protein interfaces. ==COCOMAPS== ... |
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==COCOMAPS== | ==COCOMAPS== | ||
[https://www.molnac.unisa.it/BioTools/cocomaps/ COCOMAPS] analyzes and visualizes interfaces in biological complexes (such as protein-protein, protein-DNA and protein-RNA complexes). The interface(s) to analyze are specified with the chain identifiers in the [[PDB file]]. | [https://www.molnac.unisa.it/BioTools/cocomaps/ COCOMAPS]<ref>PMID: 21873642</ref> analyzes and visualizes interfaces in biological complexes (such as protein-protein, protein-DNA and protein-RNA complexes). The interface(s) to analyze are specified with the chain identifiers in the [[PDB file]]. Output includes three different contact maps, as well as tables reporting detailed information about the interacting residues (defined on the basis of a cut-off distance that can be customized by the user), the residues at the interfaces (defined on the basis of the buried surface upon complex formation), the inter-molecular H-bonds, the buried area, and the interface areas (both as Å<sup>2</sup> and percentages). | ||
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