3dme: Difference between revisions

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~~[[Image:3dme.png|left|200px]]~~

==Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141==

~~<!--~~

== Structural highlights ==

~~The line below this paragraph, containing "STRUCTURE_3dme", creates the "Structure Box" on the page.~~

<table><tr><td colspan='2'>[[3dme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DME FirstGlance]. <br>

~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~

</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene><br>

~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~

<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BP3253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=520 Bordetella pertussis])</td></tr>

~~or leave the SCENE parameter empty for the default display.~~

<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dme OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dme RCSB], [http://www.ebi.ac.uk/pdbsum/3dme PDBsum]</span></td></tr>

~~-->~~

<table>

~~{{STRUCTURE_3dme| PDB=3dme | SCENE= }}~~

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

===Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141===

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dme_consurf.spt"</scriptWhenChecked>

==~~About this Structure~~==

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

[[3dme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA].

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

__TOC__

</StructureSection>

[[Category: Bordetella pertussis]]

[[Category: Abashidze, M.]]

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@@ Line 1: / Line 1: @@
-[[Image:3dme.png|left|200px]]
+==Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141==
+<StructureSection load='3dme' size='340' side='right' caption='[[3dme]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-<!--
+== Structural highlights ==
-The line below this paragraph, containing "STRUCTURE_3dme", creates the "Structure Box" on the page.
+<table><tr><td colspan='2'>[[3dme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DME FirstGlance]. <br>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene><br>
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BP3253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=520 Bordetella pertussis])</td></tr>
-or leave the SCENE parameter empty for the default display.
+<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dme FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dme OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dme RCSB], [http://www.ebi.ac.uk/pdbsum/3dme PDBsum]</span></td></tr>
--->
+<table>
-{{STRUCTURE_3dme|  PDB=3dme  |  SCENE=  }}
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-===Crystal structure of conserved exported protein from Bordetella pertussis. NorthEast Structural Genomics target BeR141===
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dme_consurf.spt"</scriptWhenChecked>
-==About this Structure==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[3dme]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DME OCA].
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Bordetella pertussis]]
 [[Category: Abashidze, M.]]