Sandbox 51: Difference between revisions
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Pancreatic lipase initiates the breakdown of triacylglycerols into 2-monoacylglycerols and fatty acids. The digestion of triacylglycerols is a major source of energy storage in metabolism. Consequently, lipase hydrolyzes the ester bonds of the triglycerides. Lipase, as a digestive enzyme, is soluble in water but the triacylglycerides it hydrolyzes are not. Bile salts surround the fatty acid globules to make them more soluble. Lipase activity requires bile acids, its coenzyme, and calcium ions to acheive the correct orientation to hydrolyze the fats <ref>Fundamentals of Biochemistry...</ref> | Pancreatic lipase initiates the breakdown of triacylglycerols into 2-monoacylglycerols and fatty acids. The digestion of triacylglycerols is a major source of energy storage in metabolism. Consequently, lipase hydrolyzes the ester bonds of the triglycerides. Lipase, as a digestive enzyme, is soluble in water but the triacylglycerides it hydrolyzes are not. Bile salts surround the fatty acid globules to make them more soluble. Lipase activity requires bile acids, its coenzyme, and calcium ions to acheive the correct orientation to hydrolyze the fats <ref>Fundamentals of Biochemistry...</ref> | ||
==Mechanism== | ==Mechanism== | ||
In addition to the effects of bile salts, Lipase is activated by the coenzyme colipase, which binds to the C-terminal non-catalytic domain. Upon binding, active lipase is stabilized for the hydrophobic interaction with the triacylglycerides <ref>Fundamentals of Biochemistry...</ref>. Colipase must be present for activation of lipase. Lipase activation at the lipid-water interface of triacylglycerides, in the presence of colipase and bile salts, is known as interfacial activation. Colipase is also secreted in the pancreas, but in its inactive form, which must be activated by trypsin before interacting with lipase <ref>"Colipase". Wikipedia: The Free Encyclopedia. 5 July 2011 [http://en.wikipedia.org/wiki/Colipase]</ref>. Colipase and lipase <scene name='Sandbox_51/Contacts/3'>contacts</scene> are at opposite of the active site on the C-terminal, including polar interactions such as <scene name='Sandbox_51/Salt_bridges/2'>salt bridges</scene> and van der waals forces which stabilize the interaction <ref>van Tilbeurgh H, etc."Structure of the pancreatic lipase-procolipase complex", 1992 Sep 10;359(6391):159-62. PMID:1522902.[http://www.proteopedia.org/wiki/index.php/1n8s]</ref>. <scene name='Sandbox_51/Lipase_and_colipase/1'>Colipase and lipase in complex with a triacylglyceride</scene> shows a unique feature of lipase is the lid over the active sight. Once colipase has anchored lipase to the lipid-water membrane, a surface change occurs. The lid of lipase has been acknowledged as essential to lipase action. The 10 residue beta-5 loop changes confirmation exposing lipase's oxyanion hole and hydrophobic surface. Before colipase binding, lipase is in the <scene name='Sandbox_51/Closed_lid/2'>closed confirmation</scene> where the beta-5 loop(residues 76-84, in pink) and lid (residues 237-261, yellow) serves to protect the oxyanion hole from solvent interaction. The <scene name='Sandbox_51/Mutated_open_ring/4'>open lid</scene> structure is accompanied by peptide shifts- one such important shift is at residues 240-252 (part of the lid residues in yellow, close in vicinity to the active site). The peptide shifts accompany the lid opening, and increase hydrophobic surface exposure initiating the reaction with the lipid. Colipase hydrophobic loops interact with the hydrophobic atmosphere of the triacylglyceride initiating lipase active site binding to the lipid. Once colipase is bound, lipase initiates a serine-like hydrolysis involving His, Asp, Ser residues in the catalytic triad releasing the lipid products <ref>Fundamentals of Biochemistry...</ref>. In the reaction, serine attacks the ester, forming an acyl-enzyme intermediate. The His and Asp residues help to stabilize the oxyanion intermediate through hydrogen bonding. Water enters the active site and reacts to release lipase and free the fatty acid. This acylation and deacylation reaction is usually completely reversible. | In addition to the effects of bile salts, Lipase is activated by the coenzyme colipase, which binds to the C-terminal non-catalytic domain. Upon binding, active lipase is stabilized for the hydrophobic interaction with the triacylglycerides <ref>Fundamentals of Biochemistry...</ref>. Colipase must be present for activation of lipase. Lipase activation at the lipid-water interface of triacylglycerides, in the presence of colipase and bile salts, is known as interfacial activation. Colipase is also secreted in the pancreas, but in its inactive form, which must be activated by trypsin before interacting with lipase <ref>"Colipase". Wikipedia: The Free Encyclopedia. 5 July 2011 [http://en.wikipedia.org/wiki/Colipase]</ref>. Colipase and lipase <scene name='Sandbox_51/Contacts/3'>contacts</scene> are at opposite of the active site on the C-terminal, including polar interactions such as <scene name='Sandbox_51/Salt_bridges/2'>salt bridges</scene> and van der waals forces which stabilize the interaction <ref>van Tilbeurgh H, etc."Structure of the pancreatic lipase-procolipase complex", 1992 Sep 10;359(6391):159-62. PMID:1522902.[http://www.proteopedia.org/wiki/index.php/1n8s]</ref>. <scene name='Sandbox_51/Lipase_and_colipase/1'>Colipase and lipase in complex with a triacylglyceride</scene> shows a unique feature of lipase is the lid over the active sight. Once colipase has anchored lipase to the lipid-water membrane, a surface change occurs. The lid of lipase has been acknowledged as essential to lipase action. The 10 residue beta-5 loop changes confirmation exposing lipase's oxyanion hole and hydrophobic surface. Before colipase binding, lipase is in the <scene name='Sandbox_51/Closed_lid/2'>closed confirmation</scene> where the beta-5 loop(residues 76-84, in pink) and lid (residues 237-261, yellow) serves to protect the oxyanion hole from solvent interaction. The <scene name='Sandbox_51/Mutated_open_ring/4'>open lid</scene> structure is accompanied by peptide shifts- one such important shift is at residues 240-252 (part of the lid residues in yellow, close in vicinity to the active site). The peptide shifts accompany the lid opening, and increase hydrophobic surface exposure initiating the reaction with the lipid. Also, it is evident from the image that part of the beta-5 loop interacts with colipase in the open state. The lid opening is accompanied by a change in secondary structure from a mostly beta-extended confirmation to more than half helices at the active sight <ref>Thomas, A.etc. "Role of the Lid Hydrophobicity Pattern in Pancreatic | ||
Lipase Activity*", The Journal of Biological Chemistry, 2005 September 22; 280(48):40074–40083.</ref>. | |||
Colipase hydrophobic loops interact with the hydrophobic atmosphere of the triacylglyceride initiating lipase active site binding to the lipid and lid opening. Once colipase is bound, lipase initiates a serine-like hydrolysis involving His, Asp, Ser residues in the catalytic triad releasing the lipid products <ref>Fundamentals of Biochemistry...</ref>. In the reaction, serine attacks the ester, forming an acyl-enzyme intermediate. The His and Asp residues help to stabilize the oxyanion intermediate through hydrogen bonding. Water enters the active site and reacts to release lipase and free the fatty acid. This acylation and deacylation reaction is usually completely reversible. | |||
[[Image:F6.medium.gif]] <ref> Reetz, Manfield F. Controlling the enantioselectivity of enzymes by directed evolution: Practical and theoretical ramifications. PNAS: 12 April 2004 [http://www.pnas.org/content/101/16/5716.full]</ref>. | [[Image:F6.medium.gif]] <ref> Reetz, Manfield F. Controlling the enantioselectivity of enzymes by directed evolution: Practical and theoretical ramifications. PNAS: 12 April 2004 [http://www.pnas.org/content/101/16/5716.full]</ref>. | ||