Homology modeling servers: Difference between revisions
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* [http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] allows users to calculate comparative models on demand. | * [http://modbase.compbio.ucsf.edu/modbase-cgi/index.cgi ModBase: Database of Comparative Protein Structure Models] allows users to calculate comparative models on demand. | ||
**[http://www.ncbi.nlm.nih.gov/pubmed/17640066 The Homology Modeling Automatically (HOMA) web site] | |||
**[http://www.yasara.org/ YASARA] - Yet Another Scientific Artificial Reality Application) features a complete homology modeling module that fully automatically takes all the steps from an amino acid sequence to a refined high-resolution model using a CASP approved protocol. | |||
**[http://zhanglab.ccmb.med.umich.edu/I-TASSER/ I-Tasser] - employs comparative protein modelling based on protein threading and has won the last few CASP events | |||
==Handling of gaps== | ==Handling of gaps== | ||
