Sandbox Reserved 428: Difference between revisions

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===Binding Interactions===
===Binding Interactions===
<scene name='Sandbox_Reserved_428/Binds_to_dna/1'>DNA Binding</scene>
<scene name='Sandbox_Reserved_428/Binds_to_dna/1'>DNA Binding</scene>
The interactions that hold this protein together are aided by the interaction of Mg2+ atoms.  They hold together the active site of the dimers.  This is a charge-charge interaction, since the Magnesium has a 2+ charge.  The oxygen atoms also have a partial negative charge which interactions with this positive charge.


===Additional Features===
===Additional Features===

Revision as of 16:13, 5 March 2012


This Sandbox is Reserved from January 19, 2016, through August 31, 2016 for use for Proteopedia Team Projects by the class Chemistry 423 Biochemistry for Chemists taught by Lynmarie K Thompson at University of Massachusetts Amherst, USA. This reservation includes Sandbox Reserved 425 through Sandbox Reserved 439.


YourMacromolecule

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Drag the structure with the mouse to rotate

Introduction

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Outline -found in e. coli -is a type II restriction endonuclease/enzyme -explain restriction enzymes---cut DNA -explain differences between type II and others -works in presence of Mg(2+) -cuts specific section of DNA

DNA zoom

Overall Structure

Alpha Helixes and Beta Sheets Dimer Complex

Binding Interactions

DNA Binding

The interactions that hold this protein together are aided by the interaction of Mg2+ atoms. They hold together the active site of the dimers. This is a charge-charge interaction, since the Magnesium has a 2+ charge. The oxygen atoms also have a partial negative charge which interactions with this positive charge.

Additional Features

Credits

Introduction - Jesse

Overall Structure - Nicole

Drug Binding Site - Julia

Additional Features - Sam

References