3v7p: Difference between revisions

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~~[[Image:3v7p.png|left|200px]]~~

==Crystal structure of amidohydrolase nis_0429 (target efi-500396) from Nitratiruptor sp. sb155-2==

~~<!--~~

== Structural highlights ==

~~The line below this paragraph, containing "STRUCTURE_3v7p", creates the "Structure Box" on the page.~~

<table><tr><td colspan='2'>[[3v7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nitratiruptor_sp._sb155-2 Nitratiruptor sp. sb155-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7P OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V7P FirstGlance].

~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>

~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~

<tr id='gene'><td class="sblockLbl">[[Gene|Gene:]]</td><td class="sblockDat">NIS_0429 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=387092 Nitratiruptor sp. SB155-2])</td></tr>

~~or leave the SCENE parameter empty for the default display.~~

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v7p RCSB], [http://www.ebi.ac.uk/pdbsum/3v7p PDBsum]</td></tr>

~~-->~~

</table>

~~{{STRUCTURE_3v7p| PDB=3v7p | SCENE= }}~~

== Function ==

[[http://www.uniprot.org/uniprot/A6Q234_NITSB A6Q234_NITSB]] Catalyzes the deamination of aminodeoxyfutalosine (AFL) into futalosine (FL), a step in the biosynthesis of menaquinone (MK, vitamin K2). To a lesser extent, can also deaminate 5'-methylthioadenosine.<ref>PMID:23972005</ref>

===Crystal structure of amidohydrolase nis_0429 (target efi-500396) from Nitratiruptor sp. sb155-2===

== References ==

__TOC__

==~~About this Structure~~==

</StructureSection>

[[3v7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacteria Bacteria~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7P OCA].

[[Category: Nitratiruptor sp. sb155-2]]

[[Category: ~~Bacteria~~]]

[[Category: Almo, S C]]

[[Category: Almo, S C.]]

[[Category: Bhosle, R]]

[[Category: Bhosle, R.]]

[[Category: Chowdhury, S]]

[[Category: Chowdhury, S.]]

[[Category: Evans, B]]

[[Category: Evans, B.]]

[[Category: Gerlt, J A]]

[[Category: Gerlt, J A.]]

[[Category: Glenn, A Scott]]

[[Category: Glenn, A Scott.]]

[[Category: Hammonds, J]]

[[Category: Hammonds, J.]]

[[Category: Hillerich, B]]

[[Category: Hillerich, B.]]

[[Category: Imker, H J]]

[[Category: Imker, H J.]]

[[Category: Initiative, EfiEnzyme Function]]

[[Category: Initiative, EfiEnzyme Function.]]

[[Category: Patskovsky, Y]]

[[Category: Patskovsky, Y.]]

[[Category: Raushel, F M]]

[[Category: Raushel, F M.]]

[[Category: Seidel, R D]]

[[Category: Seidel, R D.]]

[[Category: Toro, R]]

[[Category: Toro, R.]]

[[Category: Washington, E]]

[[Category: Washington, E.]]

[[Category: Zencheck, W D]]

[[Category: Zencheck, W D.]]

[[Category: Amidohydrolase]]

[[Category: Efi]]

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@@ Line 1: / Line 1: @@
-[[Image:3v7p.png|left|200px]]
+==Crystal structure of amidohydrolase nis_0429 (target efi-500396) from Nitratiruptor sp. sb155-2==
+<StructureSection load='3v7p' size='340' side='right' caption='[[3v7p]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
-<!--
+== Structural highlights ==
-The line below this paragraph, containing "STRUCTURE_3v7p", creates the "Structure Box" on the page.
+<table><tr><td colspan='2'>[[3v7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Nitratiruptor_sp._sb155-2 Nitratiruptor sp. sb155-2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3V7P FirstGlance]. <br>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=BEZ:BENZOIC+ACID'>BEZ</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NIS_0429 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=387092 Nitratiruptor sp. SB155-2])</td></tr>
-or leave the SCENE parameter empty for the default display.
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3v7p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v7p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3v7p RCSB], [http://www.ebi.ac.uk/pdbsum/3v7p PDBsum]</span></td></tr>
--->
+</table>
-{{STRUCTURE_3v7p|  PDB=3v7p  |  SCENE=  }}
+== Function ==
+[[http://www.uniprot.org/uniprot/A6Q234_NITSB A6Q234_NITSB]] Catalyzes the deamination of aminodeoxyfutalosine (AFL) into futalosine (FL), a step in the biosynthesis of menaquinone (MK, vitamin K2). To a lesser extent, can also deaminate 5'-methylthioadenosine.<ref>PMID:23972005</ref>
-===Crystal structure of amidohydrolase nis_0429 (target efi-500396) from Nitratiruptor sp. sb155-2===
+== References ==
+<references/>
+__TOC__
-==About this Structure==
+</StructureSection>
-[[3v7p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V7P OCA].
+[[Category: Nitratiruptor sp. sb155-2]]
-[[Category: Bacteria]]
+[[Category: Almo, S C]]
-[[Category: Almo, S C.]]
+[[Category: Bhosle, R]]
-[[Category: Bhosle, R.]]
+[[Category: Chowdhury, S]]
-[[Category: Chowdhury, S.]]
+[[Category: Evans, B]]
-[[Category: Evans, B.]]
+[[Category: Gerlt, J A]]
-[[Category: Gerlt, J A.]]
+[[Category: Glenn, A Scott]]
-[[Category: Glenn, A Scott.]]
+[[Category: Hammonds, J]]
-[[Category: Hammonds, J.]]
+[[Category: Hillerich, B]]
-[[Category: Hillerich, B.]]
+[[Category: Imker, H J]]
-[[Category: Imker, H J.]]
+[[Category: Initiative, EfiEnzyme Function]]
-[[Category: Initiative, EfiEnzyme Function.]]
+[[Category: Patskovsky, Y]]
-[[Category: Patskovsky, Y.]]
+[[Category: Raushel, F M]]
-[[Category: Raushel, F M.]]
+[[Category: Seidel, R D]]
-[[Category: Seidel, R D.]]
+[[Category: Toro, R]]
-[[Category: Toro, R.]]
+[[Category: Washington, E]]
-[[Category: Washington, E.]]
+[[Category: Zencheck, W D]]
-[[Category: Zencheck, W D.]]
 [[Category: Amidohydrolase]]
 [[Category: Efi]]