3ghd: Difference between revisions

Line 1:

~~[[Image:3ghd.png|left|200px]]~~

==Crystal structure of a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain==

~~<!--~~

== Structural highlights ==

~~The line below this paragraph, containing "STRUCTURE_3ghd", creates the "Structure Box" on the page.~~

<table><tr><td colspan='2'>[[3ghd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3fio 3fio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GHD FirstGlance]. <br>

~~You may change the PDB parameter (which sets the PDB file loaded into the applet)~~

</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>

~~or the SCENE parameter (which sets the initial scene displayed when the page is loaded),~~

<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ghd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ghd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ghd RCSB], [http://www.ebi.ac.uk/pdbsum/3ghd PDBsum], [http://www.topsan.org/Proteins/MCSG/3ghd TOPSAN]</span></td></tr>

~~or leave the SCENE parameter empty for the default display.~~

<table>

~~-->~~

== Evolutionary Conservation ==

~~{{STRUCTURE_3ghd| PDB=3ghd | SCENE= }}~~

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

===Crystal structure of a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain===

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/3ghd_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

==~~About this Structure~~==

<text>to colour the structure by Evolutionary Conservation</text>

[[3ghd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3fio 3fio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHD OCA].

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

__TOC__

</StructureSection>

[[Category: Pyrococcus furiosus]]

[[Category: Brown, G.]]

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@@ Line 1: / Line 1: @@
-[[Image:3ghd.png|left|200px]]
+==Crystal structure of a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain==
+<StructureSection load='3ghd' size='340' side='right' caption='[[3ghd]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
-<!--
+== Structural highlights ==
-The line below this paragraph, containing "STRUCTURE_3ghd", creates the "Structure Box" on the page.
+<table><tr><td colspan='2'>[[3ghd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3fio 3fio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GHD FirstGlance]. <br>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ghd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ghd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ghd RCSB], [http://www.ebi.ac.uk/pdbsum/3ghd PDBsum], [http://www.topsan.org/Proteins/MCSG/3ghd TOPSAN]</span></td></tr>
-or leave the SCENE parameter empty for the default display.
+<table>
--->
+== Evolutionary Conservation ==
-{{STRUCTURE_3ghd|  PDB=3ghd  |  SCENE=  }}
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
-===Crystal structure of a cystathionine beta-synthase domain protein fused to a Zn-ribbon-like domain===
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gh/3ghd_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-==About this Structure==
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[3ghd]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3fio 3fio]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GHD OCA].
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Pyrococcus furiosus]]
 [[Category: Brown, G.]]