Sandbox Reserved 485: Difference between revisions
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The Ran protein is a small binding protein that consists of 221 residues. The <scene name='Sandbox_Reserved_485/Rangdp_secondary_structure/1'>secondary structure</scene> consists of a mixture of eleven, 70-residue alpha-helices and twelve, 55-residue beta-sheets. X-ray crystallography presented a crystal structure of the Ran bound GDP and Mg2+ examined at 2.3A resolution showed that the Ran protein shares a high resemblance to the G-domain of the Ras protein. Significant discrepancies were observed however in the GDP and Mg2+ binding sites suggesting that the binding of GTP results in significant conformational changes to the protein. Ran proteins contain a cis-glutamine which is responsible for positioning nucleophilic water which in turns activaes GTPase activity. Along with the consistencies observed in the G-domain, an extended chain and an a-helix were observed on the carboxy terminus while a compliant amino-terminal stretch and an acidic tail were observed on the amino-terminal end. | The Ran protein is a small binding protein that consists of 221 residues. The <scene name='Sandbox_Reserved_485/Rangdp_secondary_structure/1'>secondary structure</scene> consists of a mixture of eleven, 70-residue alpha-helices and twelve, 55-residue beta-sheets. X-ray crystallography presented a crystal structure of the Ran bound GDP and Mg2+ examined at 2.3A resolution showed that the Ran protein shares a high resemblance to the G-domain of the Ras protein. Significant discrepancies were observed however in the GDP and Mg2+ binding sites suggesting that the binding of GTP results in significant conformational changes to the protein. Ran proteins contain a cis-glutamine which is responsible for positioning nucleophilic water which in turns activaes GTPase activity. Along with the consistencies observed in the G-domain, an extended chain and an a-helix were observed on the carboxy terminus while a compliant amino-terminal stretch and an acidic tail were observed on the amino-terminal end. | ||
In addition to the Ran protein binding to GTP, Ran also binds to Ran-binding proteins. Ran binding proteins serves as a cofactor in regulating the export and import processes from and to the nucleus and cytoplasm. Ran binding proteins contain a discrete Ran binding domain (RBD) which consists of a single RBD with short extensions at the N and C termini. The RBD is averages 170 residues, 10 charged, hydrophilic residues being highly conserved as they act as binding sites to the contiguous <scene name='Sandbox_Reserved_485/Rangdp_hydrophobic_struct/3'>hydrophobic residues</scene> on the Ran protein. These <scene name='Sandbox_Reserved_485/Rangdp_evo_conserved_struct/1'>highly conserved sequences</scene> are observed throughout mammalian, yeast and C. elegans. An example of this reaction is Ran interacting with Ran binding proteins that are components of the nuclear pore complex, Nup 153 on the nuclear end and Nup 358 on the cytoplasmic end. Using x-ray crystallography, refined with crystal engineering revealed that these nucleoporins contain distinct Ran-binding zinc finger domains within the switch 1 region that complex with the Ran protein via H-bonds at Lys38 and Thr42. | In addition to the Ran protein binding to GTP, Ran also binds to Ran-binding proteins. Ran binding proteins serves as a cofactor in regulating the export and import processes from and to the nucleus and cytoplasm. Ran binding proteins contain a discrete Ran binding domain (RBD) which consists of a single RBD with short extensions at the N and C termini. The RBD is averages 170 residues, 10 charged, hydrophilic residues being highly conserved as they act as binding sites to the contiguous <scene name='Sandbox_Reserved_485/Rangdp_hydrophobic_struct/3'>hydrophobic residues</scene> on the Ran protein. These <scene name='Sandbox_Reserved_485/Rangdp_evo_conserved_struct/1'>highly conserved sequences</scene> [[Image:ZnF-RanGDP.jpg|thumb|100px]]are observed throughout mammalian, yeast and C. elegans. An example of this reaction is Ran interacting with Ran binding proteins that are components of the nuclear pore complex, Nup 153 on the nuclear end and Nup 358 on the cytoplasmic end. Using x-ray crystallography, refined with crystal engineering revealed that these nucleoporins contain distinct Ran-binding zinc finger domains within the switch 1 region that complex with the Ran protein via H-bonds at Lys38 and Thr42. | ||
RanBP does not influence the rate-limiting step of the reaction (cleavage of GTP/ loss of P(i), but does influence the dynamics of the Ran-RanGAP interactions, allowing a 20-fold stimulation of an association reaction | RanBP does not influence the rate-limiting step of the reaction (cleavage of GTP/ loss of P(i), but does influence the dynamics of the Ran-RanGAP interactions, allowing a 20-fold stimulation of an association reaction | ||
==Mechanism of Action== | ==Mechanism of Action==[[Image:Ran cycle.jpg | thumb]] | ||
The Ran cycle plays a major function in translocating cargo such as RNA and proteins from and to the cytoplasm and nucleus. Cargo that is imported are typically proteins that are synthesized in the cytoplasm but function in the nucleus. A receptor protein known as an importin recognizes and binds to the nuclear localization signal, NLS, located on the cytoplasmic cargo. Importin-NLS protein complex is then able to be transported from the cytoplasm through the nuclear pore complex into the nucleus. Once inside the nucleus, the importin binds to Ran-GTP, allowing the release of the protein from the importin. The Ran-GTP-importin complex migrates back through the nuclear pore complex to release the importin back into the cytosplasm for reuse as Ran-GTP is hydrolyzed to Ran-GDP. | The Ran cycle plays a major function in translocating cargo such as RNA and proteins from and to the cytoplasm and nucleus. Cargo that is imported are typically proteins that are synthesized in the cytoplasm but function in the nucleus. A receptor protein known as an importin recognizes and binds to the nuclear localization signal, NLS, located on the cytoplasmic cargo. Importin-NLS protein complex is then able to be transported from the cytoplasm through the nuclear pore complex into the nucleus. Once inside the nucleus, the importin binds to Ran-GTP, allowing the release of the protein from the importin. The Ran-GTP-importin complex migrates back through the nuclear pore complex to release the importin back into the cytosplasm for reuse as Ran-GTP is hydrolyzed to Ran-GDP. | ||
The export of cargo into the cytoplasm typically involves RNA molecules that are synthesized in the nucleus but function in the cytoplasm. The receptor protein known as exportin binds to Ran-GTP within the nucleus to promote the recognition and binding of exportin to the nuclear export signals, NES, the is located on the RNA bound cargo protein. The exportin then mediates the transport of the complex through the nuclear pores | The export of cargo into the cytoplasm typically involves RNA molecules that are synthesized in the nucleus but function in the cytoplasm. The receptor protein known as exportin binds to Ran-GTP within the nucleus to promote the recognition and binding of exportin to the nuclear export signals, NES, the is located on the RNA bound cargo protein. The exportin then mediates the transport of the complex through the nuclear pores | ||
The key to the import and export of cargo material is dependent on the concentration of Ran-GTP. The concentration of Ran-GTP is maintained by guanine-nucleotide exchange factor, GEF, in the nucleus and a GTPase activating protein, GAP, in the cytosol. Cellular signals indicate the course of the Ran cycle and is especially significant while entering mitosis. | The key to the import and export of cargo material is dependent on the concentration of Ran-GTP. The concentration of Ran-GTP is maintained by guanine-nucleotide exchange factor, GEF, in the nucleus and a GTPase activating protein, GAP, in the cytosol. Cellular signals indicate the course of the Ran cycle and is especially significant while entering mitosis. | ||
==Possible Applications== | ==Possible Applications== | ||
Ran also serves a variety of other functions such as mediating DNA synthesis and advancements through a cell cycle. Ran regulates these functions by directing the formation and organization of the microtubule complex. Ran-GTP promotes spindle assembly and the spindle fiber’s attachment to the chromosome. Ran is also involved in activating T cells and the reassembly of the nuclear envelope during mitosis. | Ran also serves a variety of other functions such as mediating DNA synthesis and advancements through a cell cycle. Ran regulates these functions by directing the formation and organization of the microtubule complex. Ran-GTP promotes spindle assembly and the spindle fiber’s attachment to the chromosome. Ran is also involved in activating T cells and the reassembly of the nuclear envelope during mitosis. | ||
