ConSurfDB vs. ConSurf: Difference between revisions

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Eric Martz (talk | contribs)
Eric Martz (talk | contribs)
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See [[#How to Insert a ConSurf Result Into a Proteopedia Green Link|below]] for instructions on how to make a green-link scene in Proteopedia that shows your single-function ConSurf result.
See [[#How to Insert a ConSurf Result Into a Proteopedia Green Link|below]] for instructions on how to make a green-link scene in Proteopedia that shows your single-function ConSurf result.


If your results have more than a few amino acids with insufficient data (<font color="#c0c000"><b>yellow color</b></font>), you need more sequences. Repeat the procedure above with one change in the ConSurf job submission form: under ''Advanced Options'', use the much larger '''Clean Uniprot''' database instead of the default Swiss-Prot database.
If your results have more than a few amino acids with insufficient data (<font color="#c0c000"><b>yellow color</b></font>), you need more sequences. Try repeating the procedure above with one change. Under "Choose parameters to build the Multiple Sequence Alignment (MSA)", change the ''Proteins Database'' to UniProt or NR (larger databases than the default Uniref90).


==The ConSurf-DB Mechanism==
==The ConSurf-DB Mechanism==