DNA ligase: Difference between revisions

Line 17:

== 3D Structures of DNA ligase ==

''Update ~~November 2011~~''

''Update June 2012''

===ATP-dependent LigD===

Line 28:

[[2fao]] - PaLigD polymerase domain – ''Pseudomonas aeruginosa''

[[2faq]], [[ 2far]] - PaLigD polymerase domain + ATP + Mn

[[1a0i]] – LigD + ATP – Bacteriophage T7

[[1a0i]] – LigD + ATP – Bacteriophage T7

[[4eq5]] – LigD + AMP – ''Thermococcus sibiricus''

===NAD+-dependent LigD===

Line 36:

Line 37:

[[1ta8]], [[ 1tae]] - EfLigD adenylation domain

[[1zau]] - LigD adenylation domain – ''Mycobacterium tuberculosis''

[[1v9p]], [[ 1dgs]] – LigD – ''~~Thermus~~ filiformis''

[[1v9p]], [[ 1dgs]] – LigD – ''Thermos filiformis''

[[1b04]] – LigD adenylation domain (mutant) – ''Geobacillus stearothermophilus''

Line 45:

Line 46:

[[2owo]] – LigD + DNA + AMP + CMP – ''Escherichia coli''

[[3qwu]] – LigD – ''Aquifex aeolicus''

[[3pn1]] – ~~LigD~~ adenylation domain + inhibitor – ''Haemophilus influenzae''

[[3pn1]] – HiLigD adenylation domain + inhibitor – ''Haemophilus influenzae''

[[1l7b]] – LigD BRCT domain – ''~~Thermus~~ thermophilus'' - NMR

[[3uq8]] - HiLigD adenylation domain + NAD

[[1l7b]] – LigD BRCT domain – ''Thermos thermophilus'' - NMR

[[3rr5]] – LigD - ''Thermococcus''

===Mammalian LigD I===

Navigation menu

@@ Line 17: / Line 17: @@
 == 3D Structures of DNA ligase ==
-''Update November 2011''
+''Update June 2012''
 ===ATP-dependent LigD===
@@ Line 28: / Line 28: @@
 [[2fao]] - PaLigD polymerase domain – ''Pseudomonas aeruginosa''<br />
 [[2faq]], [[ 2far]] - PaLigD polymerase domain + ATP + Mn<br />
-[[1a0i]] – LigD + ATP – Bacteriophage T7
+[[1a0i]] – LigD + ATP – Bacteriophage T7<br />
+[[4eq5]] – LigD + AMP – ''Thermococcus sibiricus''
 ===NAD+-dependent LigD===
@@ Line 36: / Line 37: @@
 [[1ta8]], [[ 1tae]] - EfLigD adenylation domain<br />
 [[1zau]] - LigD adenylation domain – ''Mycobacterium tuberculosis''<br />
-[[1v9p]], [[ 1dgs]] – LigD – ''Thermus filiformis''<br />
+[[1v9p]], [[ 1dgs]] – LigD – ''Thermos filiformis''<br />
 [[1b04]] – LigD adenylation domain (mutant) – ''Geobacillus stearothermophilus''
@@ Line 45: / Line 46: @@
 [[2owo]] – LigD + DNA + AMP + CMP – ''Escherichia coli''<br />
 [[3qwu]] – LigD – ''Aquifex aeolicus''<br />
-[[3pn1]] – LigD adenylation domain + inhibitor – ''Haemophilus influenzae''<br />
+[[3pn1]] – HiLigD adenylation domain + inhibitor – ''Haemophilus influenzae''<br />
-[[1l7b]] – LigD BRCT domain – ''Thermus thermophilus'' - NMR
+[[3uq8]] - HiLigD adenylation domain + NAD<br />
+[[1l7b]] – LigD BRCT domain – ''Thermos thermophilus'' - NMR<br />
+[[3rr5]] – LigD - ''Thermococcus''
 ===Mammalian LigD I===