Sandbox 38: Difference between revisions
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==Residues== | ==Residues== | ||
The protein consists of <scene name='Sandbox_38/Adenylate_kinase_2o_structure/4'>hydrophobic</scene> and <scene name='Sandbox_38/Adenylate_kinase_2o_structure/5'>hydrophilic</scene> residues, highlighted in gray and red, respectively. | The protein consists of <scene name='Sandbox_38/Adenylate_kinase_2o_structure/4'>hydrophobic</scene> and <scene name='Sandbox_38/Adenylate_kinase_2o_structure/5'>hydrophilic</scene> residues, highlighted in gray and red, respectively. | ||
==Water Accessibility== | |||
The protein has certain <scene name='Sandbox_38/Adenylate_kinase_2o_structure/6'>water accessibility</scene> (water shown in blue, the enzyme shown in white), since water can't interact with all of it. Water also interacts with some of the <scene name='Sandbox_38/Adenylate_kinase_2o_structure/7'>internal residues</scene>. Waters are and aren't places. | |||
==Ligand== | |||
Some <scene name='Sandbox_38/Adenylate_kinase_2o_structure/8'>residues contact the ligand</scene>. Although not all of the highlighted residues contact the ligand, most of them do. Cationic side chains are shown in blue, whereas anionic side chains are shown in red. What kind of side chains interact with non-hydrolysable substrate. The <scene name='Sandbox_38/Adenylate_kinase_2o_structure/10'>catalytic residues</scene> are shown in green. | |||
