Sandbox 33: Difference between revisions
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<Structure load='1ake' size='500' frame='true' align='right' caption='Adenylate Kinase' scene='Insert optional scene name here' /> | <Structure load='1ake' size='500' frame='true' align='right' caption='Adenylate Kinase' scene='Insert optional scene name here' /> | ||
<scene name='Sandbox_33/ | <scene name='Sandbox_33/1ake/1'>adenylate kinase</scene> 1ake | ||
<scene name='Sandbox_33/Secondary_structure_colored/2'>secondary structure</scene> the helices are shown in hot pink and the beta sheets are shown in a purple, other features?? | <scene name='Sandbox_33/Secondary_structure_colored/2'>secondary structure</scene> the helices are shown in hot pink and the beta sheets are shown in a purple, other features?? | ||
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<scene name='Sandbox_33/Hbonds/1'>Hydrogen Bonding</scene> | <scene name='Sandbox_33/Hbonds/1'>Hydrogen Bonding</scene> | ||
<scene name='Sandbox_33/Hbondingpleaseeee/1'> | <scene name='Sandbox_33/Hbondingpleaseeee/1'>hbond</scene> | ||
<scene name='Sandbox_33/Hbond/1'>hbond</scene> | |||
<scene name='Sandbox_33/Hydrogen_bonds/1'>hydrogen bonds</scene> In the text around your green link, make sure you talk about the hydrogen bonds. Seeing the hydrogen bonds on the beta sheets should also help you to decide if they are parallel or anti-parallel, and you should comment on that as well. | <scene name='Sandbox_33/Hydrogen_bonds/1'>hydrogen bonds</scene> In the text around your green link, make sure you talk about the hydrogen bonds. Seeing the hydrogen bonds on the beta sheets should also help you to decide if they are parallel or anti-parallel, and you should comment on that as well. | ||
as dr tims again. | |||
<scene name='Sandbox_33/Stickwire_hydrophobic/1'>hydrophobic residues</scene> describe representation | <scene name='Sandbox_33/Stickwire_hydrophobic/1'>hydrophobic residues</scene> describe representation | ||
<scene name='Sandbox_33/Stickwire_charged/1'>polar and charged residues</scene> | <scene name='Sandbox_33/Stickwire_charged/1'>hydrophilic residues</scene> describe representation polar and charged residues | ||
<scene name='Sandbox_33/Waters/1'>waters</scene> write something about where the waters are, and arent | |||
<scene name='Sandbox_33/Waters_with_ligand_highlighted/1'>waters of hydration</scene> ligand highlighted brown | |||
<scene name='Sandbox_33/Ligand_contacts/1'>ligand contacts</scene> | |||
When you add the green link to the top part of the page, make sure you say something about what kinds of side-chains interact with the non-hydrolysable substrate, and if that makes sense. | |||
<scene name='Sandbox_33/Catalytic_residues/1'>catalytic residues</scene> catalytic residues, check w/ dr tims to see if i have selected the rite ones | |||
Revision as of 02:16, 19 October 2012
Please do NOT make changes to this Sandbox. Sandboxes 30-60 are reserved for use by Biochemistry 410 & 412 at Messiah College taught by Dr. Hannah Tims during Fall 2012 and Spring 2013.
adenylate kinase 1ake secondary structure the helices are shown in hot pink and the beta sheets are shown in a purple, other features??
hydrophobic residues describe representation hydrophilic residues describe representation polar and charged residues
waters write something about where the waters are, and arent waters of hydration ligand highlighted brown When you add the green link to the top part of the page, make sure you say something about what kinds of side-chains interact with the non-hydrolysable substrate, and if that makes sense.
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