3ndt: Difference between revisions

Line 1:

~~[[Image:3ndt.png|left|200px]]~~

==HIV-1 Protease Saquinavir:Ritonavir 1:1 complex structure==

~~{{STRUCTURE_3ndt| PDB=3ndt | SCENE= }}~~

== Structural highlights ==

<table><tr><td colspan='2'>[[3ndt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_bh10 Human immunodeficiency virus type 1 bh10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDT OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NDT FirstGlance].

===HIV-1 Protease Saquinavir:Ritonavir 1:1 complex structure===

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ROC:(2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-ISOQUINOLIN-2-YL]-3-HYDROXY-1-PHENYL-BUTAN-2-YL]-2-(QUINOLIN-2-YLCARBONYLAMINO)BUTANEDIAMIDE'>ROC</scene></td></tr>

<tr id='NonStdRes'><td class="sblockLbl">[[Non-Standard_Residue|NonStd Res:]]</td><td class="sblockDat"><scene name='pdbligand=ARF:FORMAMIDE'>ARF</scene></td></tr>

<tr id='gene'><td class="sblockLbl">[[Gene|Gene:]]</td><td class="sblockDat">gag-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11678 Human immunodeficiency virus type 1 BH10])</td></tr>

==~~About this Structure~~==

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </td></tr>

[[3ndt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_bh10 Human immunodeficiency virus type 1 bh10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDT OCA].

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ndt RCSB], [http://www.ebi.ac.uk/pdbsum/3ndt PDBsum]</td></tr>

</table>

==See Also==

*[[Virus protease|Virus protease]]

__TOC__

</StructureSection>

[[Category: HIV-1 retropepsin]]

[[Category: Human immunodeficiency virus type 1 bh10]]

[[Category: Demitri, N.]]

[[Category: Demitri, N]]

[[Category: Geremia, S.]]

[[Category: Geremia, S]]

[[Category: Olajuyigbe, F M.]]

[[Category: Olajuyigbe, F M]]

[[Category: Aid]]

[[Category: Aspartyl protease]]

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@@ Line 1: / Line 1: @@
-[[Image:3ndt.png|left|200px]]
+==HIV-1 Protease Saquinavir:Ritonavir 1:1 complex structure==
+<StructureSection load='3ndt' size='340' side='right' caption='[[3ndt]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
-{{STRUCTURE_3ndt|  PDB=3ndt  |  SCENE=  }}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3ndt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_bh10 Human immunodeficiency virus type 1 bh10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NDT FirstGlance]. <br>
-===HIV-1 Protease Saquinavir:Ritonavir 1:1 complex structure===
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ROC:(2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-ISOQUINOLIN-2-YL]-3-HYDROXY-1-PHENYL-BUTAN-2-YL]-2-(QUINOLIN-2-YLCARBONYLAMINO)BUTANEDIAMIDE'>ROC</scene></td></tr>
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ARF:FORMAMIDE'>ARF</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gag-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11678 Human immunodeficiency virus type 1 BH10])</td></tr>
-==About this Structure==
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span></td></tr>
-[[3ndt]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_bh10 Human immunodeficiency virus type 1 bh10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDT OCA].
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ndt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ndt RCSB], [http://www.ebi.ac.uk/pdbsum/3ndt PDBsum]</span></td></tr>
+</table>
 ==See Also==
 *[[Virus protease|Virus protease]]
+__TOC__
+</StructureSection>
 [[Category: HIV-1 retropepsin]]
 [[Category: Human immunodeficiency virus type 1 bh10]]
-[[Category: Demitri, N.]]
+[[Category: Demitri, N]]
-[[Category: Geremia, S.]]
+[[Category: Geremia, S]]
-[[Category: Olajuyigbe, F M.]]
+[[Category: Olajuyigbe, F M]]
 [[Category: Aid]]
 [[Category: Aspartyl protease]]