3ndy: Difference between revisions
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==The structure of the catalytic and carbohydrate binding domain of endoglucanase D from Clostridium cellulovorans== | |||
<StructureSection load='3ndy' size='340' side='right' caption='[[3ndy]], [[Resolution|resolution]] 2.10Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3ndy]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_cellulovorans Clostridium cellulovorans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3icg 3icg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NDY FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene></td></tr> | |||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ndz|3ndz]]</td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">engD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1493 Clostridium cellulovorans])</td></tr> | |||
== | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellulase Cellulase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.4 3.2.1.4] </span></td></tr> | ||
[[3ndy]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_cellulovorans Clostridium cellulovorans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3icg 3icg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NDY OCA]. | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ndy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ndy OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ndy RCSB], [http://www.ebi.ac.uk/pdbsum/3ndy PDBsum]</span></td></tr> | ||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nd/3ndy_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | ==See Also== | ||
*[[Glucanase|Glucanase]] | *[[Glucanase|Glucanase]] | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Cellulase]] | [[Category: Cellulase]] | ||
[[Category: Clostridium cellulovorans]] | [[Category: Clostridium cellulovorans]] | ||
[[Category: Bianchetti, C M | [[Category: Bianchetti, C M]] | ||
[[Category: Bingman, C A | [[Category: Bingman, C A]] | ||
[[Category: Phillips, G N | [[Category: Phillips, G N]] | ||
[[Category: Smith, R W | [[Category: Smith, R W]] | ||
[[Category: Carbohydrate binding domain]] | [[Category: Carbohydrate binding domain]] | ||
[[Category: Endoglucanase]] | [[Category: Endoglucanase]] | ||
[[Category: Glucanase]] | [[Category: Glucanase]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Xylanase]] | [[Category: Xylanase]] | ||
