3rya: Difference between revisions

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[[Image:3rya.png|left|200px]]
==Lactococcal OppA complexed with SLSQLSSQS==
<StructureSection load='3rya' size='340' side='right' caption='[[3rya]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[3rya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RYA FirstGlance]. <br>
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ryb|3ryb]], [[3drf|3drf]], [[3drg|3drg]], [[3drh|3drh]], [[3dri|3dri]], [[3drj|3drj]], [[3drk|3drk]], [[3fto|3fto]]</td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">oppA, llmg_0701 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 Lactococcus lactis])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rya OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rya RCSB], [http://www.ebi.ac.uk/pdbsum/3rya PDBsum]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Lactococcal oligopeptide-binding protein A (OppA) binds peptides with widely varying length and sequence. We previously hypothesized that a hydrophobic pocket in OppA preferentially binds a hydrophobic peptide side-chain and thus determines its binding register. Two crystal structures of OppA with different nonapeptides now indeed show binding in different registers.


{{STRUCTURE_3rya|  PDB=3rya  |  SCENE=  }}
The importance of a hydrophobic pocket for peptide binding in lactococcal OppA.,Berntsson RP, Thunnissen AM, Poolman B, Slotboom DJ J Bacteriol. 2011 Jun 10. PMID:21665971<ref>PMID:21665971</ref>


===Lactococcal OppA complexed with SLSQLSSQS===
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
{{ABSTRACT_PUBMED_21665971}}
 
==About this Structure==
[[3rya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RYA OCA].


==See Also==
==See Also==
*[[Oligopeptide-binding protein|Oligopeptide-binding protein]]
*[[Oligopeptide-binding protein|Oligopeptide-binding protein]]
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:021665971</ref><references group="xtra"/>
__TOC__
</StructureSection>
[[Category: Lactococcus lactis]]
[[Category: Lactococcus lactis]]
[[Category: Berntsson, R P.A.]]
[[Category: Berntsson, R P.A]]
[[Category: Poolman, B.]]
[[Category: Poolman, B]]
[[Category: Slotboom, D J.]]
[[Category: Slotboom, D J]]
[[Category: Thunnissen, A M.W H.]]
[[Category: Thunnissen, A M.W H]]
[[Category: Membrane anchored]]
[[Category: Membrane anchored]]
[[Category: Peptide binding]]
[[Category: Peptide binding]]
[[Category: Peptide binding protein]]
[[Category: Peptide binding protein]]
[[Category: Substrate-binding protein]]
[[Category: Substrate-binding protein]]
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