1svf: Difference between revisions

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[[Image:1svf.png|left|200px]]
==PARAMYXOVIRUS SV5 FUSION PROTEIN CORE==
<StructureSection load='1svf' size='340' side='right' caption='[[1svf]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1svf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Simian_virus_5_(strain_w3) Simian virus 5 (strain w3)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1SVF FirstGlance]. <br>
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene><br>
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FUSION PROTEIN ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11208 Simian virus 5 (strain W3)])</td></tr>
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1svf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1svf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1svf RCSB], [http://www.ebi.ac.uk/pdbsum/1svf PDBsum]</span></td></tr>
<table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1svf_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Paramyxoviruses are responsible for significant human mortality and disease worldwide, but the molecular mechanisms underlying their entry into host cells remain poorly understood. We have solved the crystal structure of a fragment of the simian parainfluenza virus 5 fusion protein (SV5 F), revealing a 96 A long coiled coil surrounded by three antiparallel helices. This structure places the fusion and transmembrane anchor of SV5 F in close proximity with a large intervening domain at the opposite end of the coiled coil. Six amino acids, potentially part of the fusion peptide, form a segment of the central coiled coil, suggesting that this structure extends into the membrane. Deletion mutants of SV5 F indicate that putative flexible tethers between the coiled coil and the viral membrane are dispensable for fusion. The lack of flexible tethers may couple a final conformational change in the F protein directly to the fusion of two bilayers.


{{STRUCTURE_1svf|  PDB=1svf  |  SCENE=  }}
Structural basis for paramyxovirus-mediated membrane fusion.,Baker KA, Dutch RE, Lamb RA, Jardetzky TS Mol Cell. 1999 Mar;3(3):309-19. PMID:10198633<ref>PMID:10198633</ref>


===PARAMYXOVIRUS SV5 FUSION PROTEIN CORE===
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
{{ABSTRACT_PUBMED_10198633}}
== References ==
 
<references/>
==About this Structure==
__TOC__
[[1svf]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Viruses Viruses]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVF OCA].
</StructureSection>
 
==Reference==
<ref group="xtra">PMID:010198633</ref><references group="xtra"/>
[[Category: Viruses]]
[[Category: Baker, K A.]]
[[Category: Baker, K A.]]
[[Category: Dutch, R E.]]
[[Category: Dutch, R E.]]

Revision as of 14:34, 29 September 2014

PARAMYXOVIRUS SV5 FUSION PROTEIN CORE

1svf, resolution 1.40Å

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