2oyo: Difference between revisions

Line 1:

~~[[Image:2oyo.png|left|200px]]~~

==Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution==

~~{{STRUCTURE_2oyo| PDB=2oyo | SCENE= }}~~

== Structural highlights ==

<table><tr><td colspan='2'>[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OYO FirstGlance]. <br>

===Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution===

</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene><br>

<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>

<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_604910.1, Dgeo_1446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68909 Deinococcus geothermalis])</td></tr>

==~~About this Structure~~==

<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oyo RCSB], [http://www.ebi.ac.uk/pdbsum/2oyo PDBsum], [http://www.topsan.org/Proteins/JCSG/2oyo TOPSAN]</span></td></tr>

[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA].

<table>

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyo_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

__TOC__

</StructureSection>

[[Category: Deinococcus geothermalis]]

[[Category: JCSG, Joint Center for Structural Genomics.]]

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@@ Line 1: / Line 1: @@
-[[Image:2oyo.png|left|200px]]
+==Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution==
+<StructureSection load='2oyo' size='340' side='right' caption='[[2oyo]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
-{{STRUCTURE_2oyo|  PDB=2oyo  |  SCENE=  }}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OYO FirstGlance]. <br>
-===Crystal structure of Uncharacterized peroxidase-related protein (YP_604910.1) from Deinococcus geothermalis DSM 11300 at 1.51 A resolution===
+</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene><br>
+<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">YP_604910.1, Dgeo_1446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68909 Deinococcus geothermalis])</td></tr>
-==About this Structure==
+<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oyo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2oyo RCSB], [http://www.ebi.ac.uk/pdbsum/2oyo PDBsum], [http://www.topsan.org/Proteins/JCSG/2oyo TOPSAN]</span></td></tr>
-[[2oyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Deinococcus_geothermalis Deinococcus geothermalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYO OCA].
+<table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oyo_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Deinococcus geothermalis]]
 [[Category: JCSG, Joint Center for Structural Genomics.]]