3dm3: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
m Protected "3dm3" [edit=sysop:move=sysop]
OCA (talk | contribs)
No edit summary
Line 1: Line 1:
[[Image:3dm3.png|left|200px]]
==Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E==
<StructureSection load='3dm3' size='340' side='right' caption='[[3dm3]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[3dm3]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DM3 FirstGlance]. <br>
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rpa, MJ1159 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 Methanocaldococcus jannaschii])</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm3 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm3 PDBsum]</span></td></tr>
</table>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm3_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
<div style="clear:both"></div>


{{STRUCTURE_3dm3|  PDB=3dm3  |  SCENE=  }}
==See Also==
 
*[[Single-stranded DNA-binding protein|Single-stranded DNA-binding protein]]
===Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E===
__TOC__
 
</StructureSection>
 
==About this Structure==
[[3dm3]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA].
[[Category: Methanocaldococcus jannaschii]]
[[Category: Methanocaldococcus jannaschii]]
[[Category: Acton, T B.]]
[[Category: Acton, T B]]
[[Category: Ciccosanti, C.]]
[[Category: Ciccosanti, C]]
[[Category: Everett, J K.]]
[[Category: Everett, J K]]
[[Category: Hunt, J F.]]
[[Category: Hunt, J F]]
[[Category: Janjua, H.]]
[[Category: Janjua, H]]
[[Category: Maglaqui, M.]]
[[Category: Maglaqui, M]]
[[Category: Montelione, G T.]]
[[Category: Montelione, G T]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Structural genomic]]
[[Category: Nair, R.]]
[[Category: Nair, R]]
[[Category: Rost, B.]]
[[Category: Rost, B]]
[[Category: Seetharaman, J.]]
[[Category: Seetharaman, J]]
[[Category: Su, M.]]
[[Category: Su, M]]
[[Category: Tong, L.]]
[[Category: Tong, L]]
[[Category: Xiao, R.]]
[[Category: Xiao, R]]
[[Category: Dna damage]]
[[Category: Dna damage]]
[[Category: Dna recombination and repair]]
[[Category: Dna recombination and repair]]
Line 30: Line 44:
[[Category: Metal-binding]]
[[Category: Metal-binding]]
[[Category: Nesg]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Probably plays an essential for replication of the chromosome]]
[[Category: Probably plays an essential for replication of the chromosome]]
[[Category: Protein structure initiative]]
[[Category: PSI, Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Replication]]
[[Category: Replication]]
[[Category: Replication factor a synonyms rp-a rf-a replication factor a protein 1 single-stranded dna-binding protein]]
[[Category: Replication factor a synonyms rp-a rf-a replication factor a protein 1 single-stranded dna-binding protein]]
[[Category: Structural genomic]]
[[Category: Zinc-finger]]
[[Category: Zinc-finger]]

Revision as of 08:22, 12 November 2014

Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E

3dm3, resolution 2.40Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA