3dm3: Difference between revisions
From Proteopedia
Jump to navigationJump to search
m Protected "3dm3" [edit=sysop:move=sysop] |
No edit summary |
||
| Line 1: | Line 1: | ||
[[Image: | ==Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E== | ||
<StructureSection load='3dm3' size='340' side='right' caption='[[3dm3]], [[Resolution|resolution]] 2.40Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3dm3]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DM3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DM3 FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rpa, MJ1159 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 Methanocaldococcus jannaschii])</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dm3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dm3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dm3 RCSB], [http://www.ebi.ac.uk/pdbsum/3dm3 PDBsum]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dm/3dm3_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | |||
*[[Single-stranded DNA-binding protein|Single-stranded DNA-binding protein]] | |||
== | __TOC__ | ||
</StructureSection> | |||
[[ | |||
[[Category: Methanocaldococcus jannaschii]] | [[Category: Methanocaldococcus jannaschii]] | ||
[[Category: Acton, T B | [[Category: Acton, T B]] | ||
[[Category: Ciccosanti, C | [[Category: Ciccosanti, C]] | ||
[[Category: Everett, J K | [[Category: Everett, J K]] | ||
[[Category: Hunt, J F | [[Category: Hunt, J F]] | ||
[[Category: Janjua, H | [[Category: Janjua, H]] | ||
[[Category: Maglaqui, M | [[Category: Maglaqui, M]] | ||
[[Category: Montelione, G T | [[Category: Montelione, G T]] | ||
[[Category: | [[Category: Structural genomic]] | ||
[[Category: Nair, R | [[Category: Nair, R]] | ||
[[Category: Rost, B | [[Category: Rost, B]] | ||
[[Category: Seetharaman, J | [[Category: Seetharaman, J]] | ||
[[Category: Su, M | [[Category: Su, M]] | ||
[[Category: Tong, L | [[Category: Tong, L]] | ||
[[Category: Xiao, R | [[Category: Xiao, R]] | ||
[[Category: Dna damage]] | [[Category: Dna damage]] | ||
[[Category: Dna recombination and repair]] | [[Category: Dna recombination and repair]] | ||
| Line 30: | Line 44: | ||
[[Category: Metal-binding]] | [[Category: Metal-binding]] | ||
[[Category: Nesg]] | [[Category: Nesg]] | ||
[[Category: Probably plays an essential for replication of the chromosome]] | [[Category: Probably plays an essential for replication of the chromosome]] | ||
[[Category: Protein structure initiative | [[Category: PSI, Protein structure initiative]] | ||
[[Category: Replication]] | [[Category: Replication]] | ||
[[Category: Replication factor a synonyms rp-a rf-a replication factor a protein 1 single-stranded dna-binding protein]] | [[Category: Replication factor a synonyms rp-a rf-a replication factor a protein 1 single-stranded dna-binding protein]] | ||
[[Category: Zinc-finger]] | [[Category: Zinc-finger]] | ||
Revision as of 08:22, 12 November 2014
Crystal structure of a domain of a Replication factor A protein, from Methanocaldococcus jannaschii. NorthEast Structural Genomics target MjR118E
| ||||||||||||
Proteopedia Page Contributors and Editors (what is this?)
Categories:
- Methanocaldococcus jannaschii
- Acton, T B
- Ciccosanti, C
- Everett, J K
- Hunt, J F
- Janjua, H
- Maglaqui, M
- Montelione, G T
- Structural genomic
- Nair, R
- Rost, B
- Seetharaman, J
- Su, M
- Tong, L
- Xiao, R
- Dna damage
- Dna recombination and repair
- Dna repair
- Dna replication
- Dna-binding
- Metal-binding
- Nesg
- Probably plays an essential for replication of the chromosome
- PSI, Protein structure initiative
- Replication
- Replication factor a synonyms rp-a rf-a replication factor a protein 1 single-stranded dna-binding protein
- Zinc-finger
