3i3y: Difference between revisions
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==Crystal structure of Ribokinase in Complex with D-Ribose from Klebsiella pneumoniae== | |||
<StructureSection load='3i3y' size='340' side='right' caption='[[3i3y]], [[Resolution|resolution]] 2.15Å' scene=''> | |||
== Structural highlights == | |||
== | <table><tr><td colspan='2'>[[3i3y]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_mgh_78578 Klebsiella pneumoniae subsp. pneumoniae mgh 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I3Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I3Y FirstGlance]. <br> | ||
[[3i3y]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_mgh_78578 Klebsiella pneumoniae subsp. pneumoniae mgh 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I3Y OCA]. | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=RIB:RIBOSE'>RIB</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3h49|3h49]]</td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">5340552, KPN78578_16990, KPN_01729 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578])</td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribokinase Ribokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.15 2.7.1.15] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i3y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i3y OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i3y RCSB], [http://www.ebi.ac.uk/pdbsum/3i3y PDBsum]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i3/3i3y_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Klebsiella pneumoniae subsp. pneumoniae mgh 78578]] | [[Category: Klebsiella pneumoniae subsp. pneumoniae mgh 78578]] | ||
[[Category: Ribokinase]] | [[Category: Ribokinase]] | ||
[[Category: Burley, S K | [[Category: Burley, S K]] | ||
[[Category: | [[Category: Structural genomic]] | ||
[[Category: Satyanarayana, L | [[Category: Satyanarayana, L]] | ||
[[Category: Swaminathan, S | [[Category: Swaminathan, S]] | ||
[[Category: D-ribose metabolic process]] | [[Category: D-ribose metabolic process]] | ||
[[Category: Kinase]] | [[Category: Kinase]] | ||
[[Category: New | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
[[Category: Pfkb family]] | [[Category: Pfkb family]] | ||
[[Category: Protein structure initiative | [[Category: PSI, Protein structure initiative]] | ||
[[Category: Ribose]] | [[Category: Ribose]] | ||
[[Category: Sad]] | [[Category: Sad]] | ||
[[Category: Transferase]] | [[Category: Transferase]] | ||
Revision as of 12:58, 6 November 2014
Crystal structure of Ribokinase in Complex with D-Ribose from Klebsiella pneumoniae
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