2xmz: Difference between revisions
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==STRUCTURE OF MENH FROM S. AUREUS== | |||
=== | <StructureSection load='2xmz' size='340' side='right' caption='[[2xmz]], [[Resolution|resolution]] 1.94Å' scene=''> | ||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2xmz]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XMZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XMZ FirstGlance]. <br> | |||
</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate_synthase 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.99.20 4.2.99.20] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xmz RCSB], [http://www.ebi.ac.uk/pdbsum/2xmz PDBsum]</span></td></tr> | |||
</table> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
ABSTRACT: BACKGROUND: MenH (2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase) is a key enzyme in the biosynthesis of menaquinone, catalyzing an unusual 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate. RESULTS: The crystal structure of Staphylococcus aureus MenH has been determined at 2 A resolution. In the absence of a complex to inform on aspects of specificity a model of the enzyme-substrate complex has been used in conjunction with previously published kinetic analyses, site-directed mutagenesis studies and comparisons with orthologues to investigate the structure and reactivity of MenH. CONCLUSIONS: The overall basic active site displays pronounced hydrophobic character on one side and these properties complement those of the substrate. A complex network of hydrogen bonds involving well-ordered water molecules serves to position key residues participating in the recognition of substrate and subsequent catalysis. We propose a proton shuttle mechanism, reliant on a catalytic triad consisting of Ser89, Asp216 and His243. The reaction is initiated by proton abstraction from the substrate by an activated Ser89. The propensity to form a conjugated system provides the driving force for pyruvate elimination. During the elimination, a methylene group is converted to a methyl and we judge it likely that His243 provides a proton, previously acquired from Ser89 for that reduction. A conformational change of the protonated His243 may be encouraged by the presence of an anionic intermediate in the active site. | |||
Exploiting the high-resolution crystal structure of Staphylococcus aureus MenH to gain insight into enzyme activity.,Dawson A, Fyfe PK, Gillet F, Hunter WN BMC Struct Biol. 2011 Apr 22;11:19. PMID:21513522<ref>PMID:21513522</ref> | |||
== | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase]] | [[Category: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase]] | ||
[[Category: Staphylococcus aureus]] | [[Category: Staphylococcus aureus]] | ||
[[Category: Dawson, A | [[Category: Dawson, A]] | ||
[[Category: Fyfe, P K | [[Category: Fyfe, P K]] | ||
[[Category: Gillet, F | [[Category: Gillet, F]] | ||
[[Category: Hunter, W N | [[Category: Hunter, W N]] | ||
[[Category: Lyase]] | [[Category: Lyase]] | ||
[[Category: Menaquinone biosynthesis]] | [[Category: Menaquinone biosynthesis]] | ||