3dyv: Difference between revisions
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==Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism== | |||
<StructureSection load='3dyv' size='340' side='right' caption='[[3dyv]], [[Resolution|resolution]] 1.81Å' scene=''> | |||
== Structural highlights == | |||
== | <table><tr><td colspan='2'>[[3dyv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_rhamnosus_hn001 Lactobacillus rhamnosus hn001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DYV FirstGlance]. <br> | ||
[[3dyv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_rhamnosus_hn001 Lactobacillus rhamnosus hn001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DYV OCA]. | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | ||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dkr|3dkr]], [[3dlt|3dlt]], [[3dyi|3dyi]]</td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EstD ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=486408 Lactobacillus rhamnosus HN001])</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dyv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dyv RCSB], [http://www.ebi.ac.uk/pdbsum/3dyv PDBsum]</span></td></tr> | |||
</table> | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/3dyv_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Lactobacillus rhamnosus hn001]] | [[Category: Lactobacillus rhamnosus hn001]] | ||
[[Category: Bennett, M D | [[Category: Bennett, M D]] | ||
[[Category: Delabre, M L | [[Category: Delabre, M L]] | ||
[[Category: Holland, R | [[Category: Holland, R]] | ||
[[Category: Norris, G E | [[Category: Norris, G E]] | ||
[[Category: Alpha beta hydrolase]] | [[Category: Alpha beta hydrolase]] | ||
[[Category: Catalytic triad]] | [[Category: Catalytic triad]] | ||
Revision as of 09:04, 25 January 2015
Snapshots of esterase D from lactobacillus rhamnosus: Insights into a rotation driven catalytic mechanism
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