DNA polymerase: Difference between revisions
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[[DNA polymerase]] '''(Dpo)''' reads a [[DNA|DNA strand]] and catalyzes the synthesis of its complementary strand. Dpo sliding clamp is made of the complex of Dpo and [[Proliferating Cell Nuclear Antigen]] (PCNA) which encircles it. The BRCT domain in Dpo is the C-terminal domain of breast [[cancer]] susceptibility protein. The Klenow fragment is a large Dpo fragment produced upon cleavage of Dpo by [[Subtilisin|subtilisin]]. In the ''E. coli'', the EcDpo III subunits γ, δ, δ' are named clamp loader. This complex assembles the β subunit sliding clamp unto the DNA. '''Rev1''' is a '''Dpo''' involved in replication over DNA lesions. '''Terminal deoxynucleotidyl transferase (TdT)''' is a Dpo expressed in immature lymphoid cells. TdT adds nucleotides to exons during antibody gene recombination. The images at the left and at the right correspond to one representative Dpo, ''i.e.'' the crystal structure of DNA polymerase I from ''Thermus aquaticus'' ([[1taq]]). For more details see<br /> | [[DNA polymerase]] '''(Dpo)''' reads a [[DNA|DNA strand]] and catalyzes the synthesis of its complementary strand. Dpo sliding clamp is made of the complex of Dpo and [[Proliferating Cell Nuclear Antigen]] (PCNA) which encircles it. The BRCT domain in Dpo is the C-terminal domain of breast [[cancer]] susceptibility protein. The Klenow fragment is a large Dpo fragment produced upon cleavage of Dpo by [[Subtilisin|subtilisin]]. In the ''E. coli'', the EcDpo III subunits β, γ, δ, δ' are named clamp loader. This complex assembles the β subunit sliding clamp unto the DNA. '''Rev1''' is a '''Dpo''' involved in replication over DNA lesions. '''Terminal deoxynucleotidyl transferase (TdT)''' is a Dpo expressed in immature lymphoid cells. TdT adds nucleotides to exons during antibody gene recombination. The images at the left and at the right correspond to one representative Dpo, ''i.e.'' the crystal structure of DNA polymerase I from ''Thermus aquaticus'' ([[1taq]]). For more details see<br /> | ||
* [[DNA Polymerase I]]<br /> | * [[DNA Polymerase I]]<br /> | ||
* [[Polymerase III homoenzyme beta subunit]]<br /> | * [[Polymerase III homoenzyme beta subunit]]<br /> | ||
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[[1ktq]] - TaDpo I klenow fragment<br /> | [[1ktq]] - TaDpo I klenow fragment<br /> | ||
[[5ktq]] – TaDpo I + nucleotide<br /> | [[5ktq]] – TaDpo I + nucleotide<br /> | ||
[[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]] - TaDpo I + DNA<br /> | [[3ojs]], [[3oju]], [[1tau]], [[4dle]], [[4dlg]], [[4elt]], [[4elu]], [[4elv]] - TaDpo I + DNA<br /> | ||
[[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]]- TaDpo I klenow fragment + DNA<br /> | [[3po4]], [[3po5]], [[3rtv]], [[3sv3]], [[3sv4]], [[3syz]], [[3sz2]]- TaDpo I klenow fragment + DNA<br /> | ||
[[3py8]] - TaDpo I klenow fragment (mutant) + DNA<br /> | [[3py8]] - TaDpo I klenow fragment (mutant) + DNA<br /> | ||
[[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]]- TaDpo I klenow fragment + DNA + nucleotide<br /> | [[3m8r]], [[3m8s]], [[3lwl]], [[3lwm]], [[1qss]], [[1qsy]], [[1qtm]], [[2ktq]], [[3ktq]], [[4ktq]], [[3rr7]], [[3rr8]], [[3rrg]], [[3rrh]], [[3t3f]], [[4df4]], [[4df8]], [[4dfj]], [[4dfk]], [[4dfm]], [[4dfp]]- TaDpo I klenow fragment + DNA + nucleotide<br /> | ||
[[1xwl]] - GsDpo I fragment - ''Geobacillus stearothermophilus''<br /> | [[1xwl]] - GsDpo I fragment - ''Geobacillus stearothermophilus''<br /> | ||
[[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]] - GsDpo I fragment + DNA<br /> | [[2xo7]], [[3hp6]], [[3hpo]], [[2hhq]], [[2hhs]], [[2hht]], [[2hhu]], [[2hhv]], [[2hhw]], [[2hhx]], [[2hvh]], [[2hvi]], [[2hw3]], [[1xc9]], [[1ua0]], [[1ua1]], [[1njw]], [[1njx]], [[1njy]], [[1njz]], [[1nk0]], [[1nk4]], [[1nk5]], [[1nk6]], [[1nk7]], [[1nk8]], [[1nk9]], [[1nkb]], [[1nkc]], [[1nke]], [[1l3s]], [[2bdp]], [[4bdp]], [[2xy5]], [[2xy6]], [[2xy7]], [[2y1i]], [[2y1j]], [[3tan]], [[3tap]], [[3taq]], [[3tar]], [[3thv]], [[4b9l]], [[4b9m]], [[4b9n]], [[4b9s]], [[4b9t]], [[4b9u]], [[4b9v]] - GsDpo I fragment + DNA<br /> | ||
[[4dsi]], [[4dsj]], [[4dsk]], [[4dsl]], [[4dwi]] - GsDpo I fragment (mutant) + DNA<br /> | |||
[[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]] - GsDpo I fragment + DNA + nucleotide<br /> | [[3ht3]], [[1u45]], [[1u47]], [[1u48]], [[1u49]], [[1u4b]], [[1l3t]], [[1l3u]], [[1l3v]], [[1l5u]], [[1lv5]], [[3bdp]] - GsDpo I fragment + DNA + nucleotide<br /> | ||
[[3ti0]] - GsDpo I fragment + DNA + nucleotide - ''Bacillus''<br /> | [[3ti0]] - GsDpo I fragment + DNA + nucleotide - ''Bacillus''<br /> | ||
| Line 101: | Line 102: | ||
[[3e0j]] - hDpo δ2+δ3<br /> | [[3e0j]] - hDpo δ2+δ3<br /> | ||
[[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br /> | [[3mr4]], [[3mr2]], [[3mr3]], [[3mr5]], [[3mr6]] - hDpo ε catalytic core + DNA + nucleotide<br /> | ||
[[3tq1]] - hDpo η catalytic core + DNA<br /> | [[3tq1]], [[4j9k]], [[4j9l]], [[4j9m]], [[4j9n]], [[4j9o]], [[4j9p]], [[4j9q]], [[4j9r]], [[4j9s]] - hDpo η catalytic core + DNA<br /> | ||
[[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]] - hDpo η + DNA + nucleotide<br /> | [[4dl2]], [[4dl3]], [[4dl4]], [[4dl5]], [[4dl6]], [[4dl7]], [[4eey]] - hDpo η + DNA + nucleotide<br /> | ||
[[3oiq]] - yDpo α + cell division control protein 13 – yeast<br /> | [[3oiq]] - yDpo α + cell division control protein 13 – yeast<br /> | ||
[[3flo]], [[3lgb]] - yDpo α subunits A,B<br /> | [[3flo]], [[3lgb]] - yDpo α subunits A,B<br /> | ||
[[4b08]], [[4fvm]] - yDpo α subunit A<br /> | |||
[[4fxd]], [[4fyd]] - yDpo α subunit A + RNA + DNA<br /> | |||
[[3iay]] - yDpo δ catalytic subunit + DNA<br /> | [[3iay]] - yDpo δ catalytic subunit + DNA<br /> | ||
[[3oha]], [[3ohb]], [[3mfh]] - yDpo ε (mutant) + DNA<br /> | [[3oha]], [[3ohb]], [[3mfh]] - yDpo ε (mutant) + DNA<br /> | ||
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[[2vwk]] - TgDpo (mutant)<br /> | [[2vwk]] - TgDpo (mutant)<br /> | ||
[[2xhb]] - Dpo (mutant) + DNA + ''Thermococcus gorgonarius''<br /> | [[2xhb]] - Dpo (mutant) + DNA + ''Thermococcus gorgonarius''<br /> | ||
[[1wn7]], [[1wns]] – | [[1wn7]], [[1wns]] – TkDpo B - ''Thermococcus kodakarensis''<br /> | ||
[[1qht]] - | [[4k8z]] - TkDpo (mutant) + DNA<br /> | ||
[[1qht]] - ThDpo (mutant) – ''Thermococcus''<br /> | |||
[[4k8x]] - ThDpo (mutant) + DNA<br /> | |||
[[1d5a]] – DeDpo – ''Desulfurococcus''<br /> | [[1d5a]] – DeDpo – ''Desulfurococcus''<br /> | ||
[[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo + DNA – ''Pyrococcus abyssi'' | [[4flt]], [[4flu]], [[4flv]], [[4flw]], [[4flx]], [[4fly]], [[4flz]], [[4fm0]], [[4fm1]], [[4fm2]] – Dpo + DNA – ''Pyrococcus abyssi'' | ||
===Family C – bacterial chromosomal replicative Dpo=== | ===Family C – bacterial chromosomal replicative Dpo (Pol III)=== | ||
[[2hnh]], [[2hqa]] - EcDpo III subunit α catalytic fragment<br /> | [[2hnh]], [[2hqa]] - EcDpo III subunit α catalytic fragment<br /> | ||
[[ | [[2hpi]], [[2hpm]] - TaDpo III α subunit<br /> | ||
[[ | [[3e0d]] - TaDpo III α subunit + DNA<br /> | ||
[[ | [[3f2b]], [[3f2c]], [[3f2d]] – GkDpo III α subunit + DNA + nucleotide <br /> | ||
[[1zd7]], [[1zde]], [[3nzm]] - Dpo III α subunit – Synechocystis<br /> | |||
[[2keq]] - Dpo III α subunit – ''Nostoc punctiforme''<br /> | |||
[[1ok7]] - EcDpo III + EcDpo IV C-terminal<br /> | [[1ok7]] - EcDpo III + EcDpo IV C-terminal<br /> | ||
[[1mmi]], [[2pol]] - EcDpo III subunit β<br /> | [[1mmi]], [[2pol]] - EcDpo III subunit β<br /> | ||
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[[3d1g]], [[3qsb]] - EcDpo III subunit β + inhibitor<br /> | [[3d1g]], [[3qsb]] - EcDpo III subunit β + inhibitor<br /> | ||
[[3bep]] - EcDpo III subunit β + DNA<br /> | [[3bep]] - EcDpo III subunit β + DNA<br /> | ||
[[3d1f]] - EcDpo III β subunit + | [[2avt]] - Dpo III β subunit – ''Streptococcus pyogenes''<br /> | ||
[[2awa]] - Dpo III β subunit – ''Streptococcus pneumoniae''<br /> | |||
[[2p1j]] – TmDpo III exonuclease domain – ''Thermotoga maritima''<br /> | |||
[[1vpk]] - TmDpo III β subunit<br /> | |||
[[3p16]], [[3rb9]] - Dpo III β subunit – ''Mycobacterrium tuberculosis''<br /> | |||
[[3q4j]], [[3q4k]], [[3q4l]], [[3d1f]] - EcDpo III β subunit + peptide<br /> | |||
[[1njf]], [[1njg]] - EcDpo III subunit γ N-terminal domains 1-2<br /> | [[1njf]], [[1njg]] - EcDpo III subunit γ N-terminal domains 1-2<br /> | ||
[[2gno]] - TmDpo III γ subunit<br /> | |||
[[1jqj]], [[1jql]] - EcDpo III subunit β, δ(mutant)<br /> | [[1jqj]], [[1jql]] - EcDpo III subunit β, δ(mutant)<br /> | ||
[[1a5t]] - EcDpo III subunit δ’<br /> | [[1a5t]] - EcDpo III subunit δ’<br /> | ||
[[1xxh]], [[1jr3]] - EcDpo III subunit γ, δ, δ' <br /> | [[1xxh]], [[1jr3]] - EcDpo III subunit γ, δ, δ' <br /> | ||
[[1xxi]] - EcDpo III subunit γ, δ, δ' + nucleotide<br /> | [[1xxi]] - EcDpo III subunit γ, δ, δ' + nucleotide<br /> | ||
[[1j53]], [[1j54]], [[2gui]] - EcDpo III subunit ε N-terminal exonuclease domain<br /> | |||
[[2ido]] - EcDpo III subunit ε + HOT protein<br /> | |||
[[3glh]] - EcDpo III subunit δ, δ', τ <br /> | [[3glh]] - EcDpo III subunit δ, δ', τ <br /> | ||
[[3glf]] - EcDpo III subunit δ, δ', τ DNA<br /> | [[3glf]] - EcDpo III subunit δ, δ', τ + DNA<br /> | ||
[[3gli]] - EcDpo III subunit δ, δ', τ, ξ DNA<br /> | [[3gli]] - EcDpo III subunit δ, δ', τ, ξ + DNA<br /> | ||
[[3glg]] - EcDpo III subunit δ, δ', τ mutant DNA<br /> | [[3glg]] - EcDpo III subunit δ, δ', τ mutant DNA<br /> | ||
[[2xy8]] - EcDpo III subunit ε,θ<br /> | [[2xy8]] - EcDpo III subunit ε,θ<br /> | ||
| Line 157: | Line 172: | ||
===Family X – eukaryotic Dpo involved in base excision repair, non-homologous end-joining and V(D)J recombination.=== | ===Family X – eukaryotic Dpo involved in base excision repair, non-homologous end-joining and V(D)J recombination.=== | ||
[[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icu]], [[7icv]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]], [[7icg]], [[7ich]], [[7ick]], [[7icn]], [[7ico]], [[7icq]], [[7ics]], [[1zqe]] - hDpo β + DNA<br /> | [[3q8p]], [[3q8q]], [[3lk9]], [[3mby]], [[3isb]], [[3isc]], [[1zjm]], [[1tv9]], [[1tva]], [[1bpx]], [[1bpz]], [[1zqa]], [[1zqb]], [[1zqc]], [[1zqd]], [[1zqf]], [[1zqg]], [[1zqh]], [[1zqi]], [[1zaj]], [[1zqk]], [[1zql]], [[1zqm]], [[1zqn]], [[1zqo]], [[1zqp]], [[1zqq]], [[1zqr]], [[1zqs]], [[1zqt]], [[1zqu]], [[1zqv]], [[1zqw]], [[1zqx]], [[1zqy]], [[1zqz]], [[7ice]], [[7icf]], [[7ici]], [[7icj]], [[7icl]], [[7icm]], [[7icp]], [[7icr]], [[7ict]], [[7icu]], [[7icv]], [[8icb]], [[8icc]], [[9icj]], [[9ick]], [[9icl]], [[9icm]], [[9icp]], [[9icw]], [[9icx]], [[9icy]], [[7icg]], [[7ich]], [[7ick]], [[7icn]], [[7ico]], [[7icq]], [[7ics]], [[1zqe]], [[4gxi]], [[4gxj]], [[4gxk]], [[4kld]], [[4kle]], [[4klf]], [[4klg]], [[4klh]], [[4kli]], [[4klj]], [[4kll]], [[4klm]], [[4klo]], [[4klp]], [[4klq]], [[4kls]], [[4klt]], [[4klu]] - hDpo β + DNA<br /> | ||
[[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[1zjn]], [[1mq2]], [[1mq3]], [[1bpy]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icz]], [[9ice]], [[9icg]], [[9ich]], [[9ici]], [[9icq]], [[9ics]], [[9ict]], [[9icu]], [[9icv]], [[9icr]], [[9icn]], [[9ico]], [[8icy]], [[9ica]], [[9icb]], [[9icc]], [[9icf]], [[4do9]], [[4doa]], [[4dob]], [[4doc]] - hDpo β + DNA + nucleotide<br /> | [[3jpn]], [[3jpo]], [[3jpp]], [[3jpq]], [[3jpr]], [[3jpt]], [[3jps]], [[3isd]], [[3c2k]], [[3c2l]], [[3c2m]], [[2pxi]], [[2iso]], [[2isp]], [[2i9g]], [[2fmp]], [[2fmq]], [[2fms]], [[1zjn]], [[1mq2]], [[1mq3]], [[1bpy]], [[8ica]], [[8ice]], [[8icf]], [[8icg]], [[8ich]], [[8ici]], [[8icj]], [[8ick]], [[8icl]], [[8icm]], [[8icn]], [[8ico]], [[8icp]], [[8icq]], [[8icr]], [[8ics]], [[8ict]], [[8icu]], [[8icv]], [[8icw]], [[8icx]], [[8icz]], [[9ice]], [[9icg]], [[9ich]], [[9ici]], [[9icq]], [[9ics]], [[9ict]], [[9icu]], [[9icv]], [[9icr]], [[9icn]], [[9ico]], [[8icy]], [[9ica]], [[9icb]], [[9icc]], [[9icf]], [[4do9]], [[4doa]], [[4dob]], [[4doc]] - hDpo β + DNA + nucleotide<br /> | ||
[[2p66]], [[4f5n]] - hDpo β + DNA + nucleotide analog<br /> | [[2p66]], [[4f5n]] - hDpo β + DNA + nucleotide analog<br /> | ||
[[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]] - hDpo β (mutant) + DNA + nucleotide analog<br /> | [[4f5o]], [[4f5p]], [[4f5q]], [[4f5r]] - hDpo β (mutant) + DNA + nucleotide analog<br /> | ||
[[3ogu]] - hDpo β (mutant) + DNA<br /> | [[3ogu]], [[4jwm]], [[4jwn]] - hDpo β (mutant) + DNA<br /> | ||
[[2v6z]] - hDpo β N-terminal (mutant) - NMR<br /> | [[2v6z]] - hDpo β N-terminal (mutant) - NMR<br /> | ||
[[3k75]], [[3lqc]] - hDpo β + DNA repair protein XRCC1<br /> | [[3k75]], [[3lqc]] - hDpo β + DNA repair protein XRCC1<br /> | ||
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[[2htf]], [[2dun]] - hDpo μ BRCT domain – NMR<br /> | [[2htf]], [[2dun]] - hDpo μ BRCT domain – NMR<br /> | ||
[[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br /> | [[2ihm]] - mDpo μ catalytic domain + DNA – mouse<br /> | ||
[[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]] - rDpo β – rat<br /> | [[1rpl]], [[2bpc]], [[1bpe]], [[1bpb]], [[1bpd]], [[3uxn]] - rDpo β – rat<br /> | ||
[[2van]], [[1jn3]], [[3uxo]] - rDpo β (mutant)<br /> | [[2van]], [[1jn3]], [[3uxo]], [[3v7l]] - rDpo β (mutant)<br /> | ||
[[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo β N-terminal – NMR<br /> | [[1dk2]], [[1dk3]], [[1bno]], [[1bnp]] - rDpo β N-terminal – NMR<br /> | ||
[[1nom]] - rDpo β C-terminal<br /> | [[1nom]] - rDpo β C-terminal<br /> | ||
[[1huo]], [[1huz]] - rDpo β + DNA<br /> | [[1huo]], [[1huz]], [[3v7j]] - rDpo β + DNA<br /> | ||
[[3uxp]], [[3v72]] - rDpo β (mutant) + DNA<br /> | [[3uxp]], [[3v72]], [[3v7k]] - rDpo β (mutant) + DNA<br /> | ||
[[1bpe]] - rDpo β + nucleotide<br /> | [[1bpe]] - rDpo β + nucleotide<br /> | ||
[[2bpf]], [[2bpg]] - rDpo β + DNA + nucleotide<br /> | [[2bpf]], [[2bpg]] - rDpo β + DNA + nucleotide<br /> | ||
| Line 198: | Line 213: | ||
[[2ebw]] – hRev1 BRCT domain – NMR<br /> | [[2ebw]] – hRev1 BRCT domain – NMR<br /> | ||
[[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br /> | [[3bjy]], [[2aq4]] – yRev1 catalytic domain + DNA + nucleotide<br /> | ||
[[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]] - hDpo τ + DNA + nucleotide<br /> | [[3q8r]], [[3q8s]], [[3h4b]], [[3h4d]], [[3gv5]], [[3gv7]], [[3gv8]], [[3epg]], [[3epi]], [[2fll]], [[2fln]], [[2flp]], [[2dpi]], [[2dpj]], [[2alz]], [[1zet]], [[1t3n]], [[4ebc]], [[4ebd]], [[4ebe]], [[4fs1]], [[4fs2]], [[4eyh]], [[4eyi]] - hDpo τ + DNA + nucleotide<br /> | ||
[[3ngd]], [[3osn]] - hDpo τ catalytic fragment + DNA<br /> | [[3ngd]], [[3osn]] - hDpo τ catalytic fragment + DNA<br /> | ||
[[3h40]] - hDpo τ DNA binding domain + DNA<br /> | [[3h40]] - hDpo τ DNA binding domain + DNA<br /> | ||
| Line 206: | Line 221: | ||
[[3in5]] - hDpo κ + DNA<br /> | [[3in5]] - hDpo κ + DNA<br /> | ||
[[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]] - hDpo κ + DNA + nucleotide<br /> | [[2w7o]], [[2w7p]], [[2oh2]], [[3pzp]] - hDpo κ + DNA + nucleotide<br /> | ||
[[2lsj]] - hDpo η + DNA repair protein REV1<br /> | [[2lsj]], [[2isi]] - hDpo η + DNA repair protein REV1<br /> | ||
[[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]] - hDpo η + DNA + nucleotide<br /> | [[4ecq]], [[4ecr]], [[4ecs]], [[4ect]], [[4ecu]], [[4ecv]], [[4ecw]], [[4ecx]], [[4ecy]], [[4ecz]], [[4ed0]], [[4ed1]], [[4ed2]], [[4ed3]], [[4ed6]], [[4ed7]], [[4ed8]] - hDpo η + DNA + nucleotide<br /> | ||
[[2kwu]], [[2kwv]] - mDpo τ C-terminal + ubiquitin - NMR<br /> | [[2kwu]], [[2kwv]] - mDpo τ C-terminal + ubiquitin - NMR<br /> | ||
| Line 213: | Line 228: | ||
[[2lsk]] - mDpo κ + DNA repair protein REV1<br /> | [[2lsk]] - mDpo κ + DNA repair protein REV1<br /> | ||
[[2rdi]] - SsDpo IV - ''Sulfolobus solfataricus''<br /> | [[2rdi]] - SsDpo IV - ''Sulfolobus solfataricus''<br /> | ||
[[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]] - SsDpo IV (mutant) + DNA + nucleotide<br /> | [[3pr4]], [[3pr5]], [[2r8g]], [[2r8h]], [[2r8i]], [[2uvr]], [[2uvu]], [[2uvv]], [[2uvw]], - SsDpo IV (mutant) + DNA + nucleotide<br /> | ||
[[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]] - SsDpo IV + DNA<br /> | [[2xc9]], [[3m9m]], [[3m9n]], [[3m9o]], [[2v4q]], [[2v4r]], [[2ago]], [[1ryr]], [[1rys]], [[2w9a]], [[2w9b]], [[2w9c]], [[3gii]], [[3gij]], [[3gik]], [[3gil]], [[3gim]], [[3qz7]], [[3qz8]], [[3pvx]], [[3pw0]], [[3pw2]], [[3pw4]], [[3pw5]], [[3pw7]], [[3raq]], [[3rax]], [[3rb0]], [[3rb3]], [[3rb4]], [[3rb6]], [[3rbd]], [[3rbe]], [[4hyk]], [[4fbt]], [[4fbu]], [[4g3i]] - SsDpo IV + DNA<br /> | ||
[[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]] - SsDpo IV + DNA + nucleotide<br /> | [[2xca]], [[2xcp]], [[3khg]], [[3khh]], [[3khl]], [[3khr]], [[2w8k]], [[2w8l]], [[2rdj]], [[2v9w]], [[2va2]], [[2va3]], [[2ia6]], [[2ibk]], [[2jef]], [[2jeg]], [[2jei]], [[2jej]], [[2imw]], [[2j6s]], [[2j6t]], [[2j6u]], [[2asd]], [[2asj]], [[2asl]], [[2atl]], [[2au0]], [[2c22]], [[2c28]], [[2c2d]], [[2c2e]], [[2c2r]], [[2agp]], [[2agq]], [[2bqr]], [[2bqu]], [[2br0]], [[2bq3]], [[1s9f]], [[1s97]], [[1s0m]], [[1s0n]], [[1s0o]], [[1s10]], [[1n48]], [[1n56]], [[1jx4]], [[1jxl]], [[3t5h]], [[3t5j]], [[3t5k]], [[3t5l]], [[3v6h]], [[3v6j]], [[3v6k]], [[4gc6]], [[4gc7]] - SsDpo IV + DNA + nucleotide<br /> | ||
[[3fds]] – SsDpo IV + PCNA B + PCNA C<br /> | [[3fds]] – SsDpo IV + PCNA B + PCNA C<br /> | ||
| Line 227: | Line 242: | ||
[[3eyz]] - GsDpo I (mutant) + DNA <br /> | [[3eyz]] - GsDpo I (mutant) + DNA <br /> | ||
[[3ez5]] - GsDpo I (mutant) + DNA + nucleotide <br /> | [[3ez5]] - GsDpo I (mutant) + DNA + nucleotide <br /> | ||
[[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]] | [[3pv8]], [[3px0]], [[3px4]], [[3px6]], [[4dqi]], [[4dqp]], [[4dqq]], [[4dqr]], [[4dqs]], [[4ds4]], [[4ds5]], [[4dse]], [[4dsf]], [[4e0d]], [[4ez6]], [[4ez9]], [[4f2r]], [[4f2s]], [[4f3o]], [[4f4k]], [[4f8r]] - GkDpo I (mutant) + DNA – ''Geobacillus kaustophilus'' | ||
===Prokaryotic Pol II – DNA repair=== | ===Prokaryotic Pol II – DNA repair=== | ||
| Line 235: | Line 250: | ||
[[1qqc]] – DeDpo II<br /> | [[1qqc]] – DeDpo II<br /> | ||
===Prokaryotic Pol IV=== | |||
[[4ir1]], [[4ir9]], [[4irc]], [[4ird]], [[4irk]] - EcDpo IV + DNA<br /> | |||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
