3odg: Difference between revisions

Line 1:

~~{{STRUCTURE_3odg| PDB~~=3odg | ~~SCENE~~= }}

==crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis==

===~~crystal~~ structure ~~of xanthosine phosphorylase bound~~ with ~~xanthine~~ from Yersinia pseudotuberculosis===

== Structural highlights ==

<table><tr><td colspan='2'>[[3odg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ODG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ODG FirstGlance]. <br>

</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=XAN:XANTHINE'>XAN</scene></td></tr>

<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pndA, xapA, YPTB1201 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=633 Yersinia pseudotuberculosis])</td></tr>

<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3odg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3odg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3odg RCSB], [http://www.ebi.ac.uk/pdbsum/3odg PDBsum]</span></td></tr>

</table>

== Evolutionary Conservation ==

[[Image:Consurf_key_small.gif|200px|right]]

Check<jmol>

<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/3odg_consurf.spt"</scriptWhenChecked>

<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>

<text>to colour the structure by Evolutionary Conservation</text>

</jmolCheckbox>

</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].

==~~Function~~==

==See Also==

[[~~http://www.uniprot.org/uniprot/Q66D48_YERPS Q66D48_YERPS~~]] The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate (By similarity).[PIRNR:PIRNR000477]

*[[Purine nucleoside phosphorylase|Purine nucleoside phosphorylase]]

__TOC__

~~==About this Structure==~~

</StructureSection>

~~[[3odg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki~~/~~Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ODG OCA].~~

[[Category: Yersinia pseudotuberculosis]]

[[Category: Almo, S C.]]

[[Category: Almo, S C]]

[[Category: Burley, S K.]]

[[Category: Burley, S K]]

[[Category: Kim, J.]]

[[Category: Kim, J]]

[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]

[[Category: Structural genomic]]

[[Category: Ramagopal, U A.]]

[[Category: Ramagopal, U A]]

[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~

[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]

~~[[Category: Nysgxrc~~]]

[[Category: PSI, Protein structure initiative]]

[[Category: Protein structure initiative]]

~~[[Category: Psi-2~~]]

[[Category: Purine nucleoside binding]]

[[Category: Purine nucleoside phosphorylase]]

~~[[Category: Structural genomic]]~~

[[Category: Transferase]]

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@@ Line 1: / Line 1: @@
-{{STRUCTURE_3odg|  PDB=3odg  |  SCENE=  }}
+==crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis==
-===crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis===
+<StructureSection load='3odg' size='340' side='right' caption='[[3odg]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3odg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ODG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ODG FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=XAN:XANTHINE'>XAN</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pndA, xapA, YPTB1201 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=633 Yersinia pseudotuberculosis])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3odg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3odg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3odg RCSB], [http://www.ebi.ac.uk/pdbsum/3odg PDBsum]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/od/3odg_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+<div style="clear:both"></div>
-==Function==
+==See Also==
-[[http://www.uniprot.org/uniprot/Q66D48_YERPS Q66D48_YERPS]] The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate (By similarity).[PIRNR:PIRNR000477]
+*[[Purine nucleoside phosphorylase|Purine nucleoside phosphorylase]]
+__TOC__
-==About this Structure==
+</StructureSection>
-[[3odg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis Yersinia pseudotuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ODG OCA].
 [[Category: Yersinia pseudotuberculosis]]
-[[Category: Almo, S C.]]
+[[Category: Almo, S C]]
-[[Category: Burley, S K.]]
+[[Category: Burley, S K]]
-[[Category: Kim, J.]]
+[[Category: Kim, J]]
-[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+[[Category: Structural genomic]]
-[[Category: Ramagopal, U A.]]
+[[Category: Ramagopal, U A]]
-[[Category: New york sgx research center for structural genomic]]
+[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-[[Category: Nysgxrc]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Protein structure initiative]]
-[[Category: Psi-2]]
 [[Category: Purine nucleoside binding]]
 [[Category: Purine nucleoside phosphorylase]]
-[[Category: Structural genomic]]
 [[Category: Transferase]]