3q5c: Difference between revisions

Line 1:

~~{{STRUCTURE_3q5c~~| ~~PDB~~=3q5c ~~| SCENE~~= }}

==Crystal structure of four-way junction with sticky end==

===~~Crystal~~ structure of four-way junction with sticky ~~end===~~

~~{{ABSTRACT_PUBMED_21419105}}~~

== Structural highlights ==

<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>

</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [http://www.ebi.ac.uk/pdbsum/3q5c PDBsum]</span></td></tr>

</table>

== Publication Abstract from PubMed ==

We report here the crystal structure of the partially self-complementary decameric sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with sticky ends. Each junction binds to four others through Watson-Crick base pairing at the sticky ends to form a rhombic structure. The rhombuses bind to each other and form two dimensional tiles. The tiles stack to form the crystal. The crystal diffracted in the space group P1 to a resolution of 2.5A. The junction has the anti-parallel stacked-X conformation like other junction structures, though the formation of the rhombic net noticeably alters the details of the junction geometry.

~~==About this Structure==~~

The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice.,Venkadesh S, Mandal PK, Gautham N Biochem Biophys Res Commun. 2011 Apr 15;407(3):548-51. Epub 2011 Mar 16. PMID:21419105<ref>PMID:21419105</ref>

~~[[3q5c]] is~~ a ~~4 chain structure~~. ~~Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=3Q5C OCA].~~

==~~Reference~~==

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>

~~<ref group="xtra">PMID:021419105</ref>~~<references ~~group="xtra"~~/><~~references~~/>

</div>

[[Category: Gautham, N.]]

== References ==

[[Category: Mandal, P K.]]

[[Category: Venkadesh, S.]]

__TOC__

</StructureSection>

[[Category: Gautham, N]]

[[Category: Mandal, P K]]

[[Category: Venkadesh, S]]

[[Category: Dna]]

[[Category: Sticky end]]

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@@ Line 1: / Line 1: @@
-{{STRUCTURE_3q5c|  PDB=3q5c  |  SCENE=  }}
+==Crystal structure of four-way junction with sticky end==
-===Crystal structure of four-way junction with sticky end===
+<StructureSection load='3q5c' size='340' side='right' caption='[[3q5c]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-{{ABSTRACT_PUBMED_21419105}}
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3Q5C FirstGlance]. <br>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q5c OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3q5c RCSB], [http://www.ebi.ac.uk/pdbsum/3q5c PDBsum]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+We report here the crystal structure of the partially self-complementary decameric sequence d(CGGCGGCCGC), which self assembles to form a four-way junction with sticky ends. Each junction binds to four others through Watson-Crick base pairing at the sticky ends to form a rhombic structure. The rhombuses bind to each other and form two dimensional tiles. The tiles stack to form the crystal. The crystal diffracted in the space group P1 to a resolution of 2.5A. The junction has the anti-parallel stacked-X conformation like other junction structures, though the formation of the rhombic net noticeably alters the details of the junction geometry.
-==About this Structure==
+The sequence d(CGGCGGCCGC) self-assembles into a two dimensional rhombic DNA lattice.,Venkadesh S, Mandal PK, Gautham N Biochem Biophys Res Commun. 2011 Apr 15;407(3):548-51. Epub 2011 Mar 16. PMID:21419105<ref>PMID:21419105</ref>
-[[3q5c]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q5C OCA].
-==Reference==
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<ref group="xtra">PMID:021419105</ref><references group="xtra"/><references/>
+</div>
-[[Category: Gautham, N.]]
+== References ==
-[[Category: Mandal, P K.]]
+<references/>
-[[Category: Venkadesh, S.]]
+__TOC__
+</StructureSection>
+[[Category: Gautham, N]]
+[[Category: Mandal, P K]]
+[[Category: Venkadesh, S]]
 [[Category: Dna]]
 [[Category: Sticky end]]