Introduction to Jmol: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| Line 17: | Line 17: | ||
This drug is a good example, because it will allow us to view how the drug is able to fit into a pocket withing the protease. The first scene that we see here is one pulled from RCSB Protein Data Bank. | This drug is a good example, because it will allow us to view how the drug is able to fit into a pocket withing the protease. The first scene that we see here is one pulled from RCSB Protein Data Bank. | ||
This scene demonstrates the secondary structure of the <scene name='55/552182/Protease/1'>protease</scene>. The ligand and water molecules have been hidden in order to view the protein alone. | |||
This scene shows the <scene name='55/552182/Pocket/1'>pocket</scene> in which darunavir fits into. | |||
After inverting the selection and targeting the ligand we can visualize <scene name='55/552182/Darunavir/2'>darunavir</scene>. | |||
</StructureSection> | </StructureSection> | ||
