2jih: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
Line 1: Line 1:
[[Image:2jih.jpg|left|200px]]<br /><applet load="2jih" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:2jih.jpg|left|200px]]
caption="2jih, resolution 2.1&Aring;" />
 
'''CRYSTAL STRUCTURE OF HUMAN ADAMTS-1 CATALYTIC DOMAIN AND CYSTEINE-RICH DOMAIN (COMPLEX-FORM)'''<br />
{{Structure
|PDB= 2jih |SIZE=350|CAPTION= <scene name='initialview01'>2jih</scene>, resolution 2.1&Aring;
|SITE= <scene name='pdbsite=AC1:097+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:097+Binding+Site+For+Chain+B'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Chain+B'>AC4</scene>, <scene name='pdbsite=AC5:Cd+Binding+Site+For+Chain+A'>AC5</scene>, <scene name='pdbsite=AC6:Cd+Binding+Site+For+Chain+A'>AC6</scene>, <scene name='pdbsite=AC7:Ni+Binding+Site+For+Chain+A'>AC7</scene>, <scene name='pdbsite=AC8:Cd+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:Cd+Binding+Site+For+Chain+A'>AC9</scene>, <scene name='pdbsite=BC1:Cd+Binding+Site+For+Chain+B'>BC1</scene>, <scene name='pdbsite=BC2:Ni+Binding+Site+For+Chain+B'>BC2</scene>, <scene name='pdbsite=BC3:Cd+Binding+Site+For+Chain+B'>BC3</scene>, <scene name='pdbsite=BC4:Ni+Binding+Site+For+Chain+B'>BC4</scene>, <scene name='pdbsite=BC5:Ni+Binding+Site+For+Chain+B'>BC5</scene>, <scene name='pdbsite=BC6:Ni+Binding+Site+For+Chain+A'>BC6</scene>, <scene name='pdbsite=BC7:Mg+Binding+Site+For+Chain+A'>BC7</scene>, <scene name='pdbsite=BC8:Ni+Binding+Site+For+Chain+A'>BC8</scene>, <scene name='pdbsite=BC9:Ni+Binding+Site+For+Chain+A'>BC9</scene>, <scene name='pdbsite=CC1:Ni+Binding+Site+For+Chain+A'>CC1</scene>, <scene name='pdbsite=CC2:Ni+Binding+Site+For+Chain+A'>CC2</scene>, <scene name='pdbsite=CC3:Mg+Binding+Site+For+Chain+B'>CC3</scene>, <scene name='pdbsite=CC4:Ni+Binding+Site+For+Chain+B'>CC4</scene>, <scene name='pdbsite=CC7:Na+Binding+Site+For+Chain+A'>CC7</scene>, <scene name='pdbsite=CC8:Na+Binding+Site+For+Chain+A'>CC8</scene>, <scene name='pdbsite=CC9:Na+Binding+Site+For+Chain+A'>CC9</scene>, <scene name='pdbsite=DC1:Na+Binding+Site+For+Chain+B'>DC1</scene>, <scene name='pdbsite=DC2:Na+Binding+Site+For+Chain+B'>DC2</scene>, <scene name='pdbsite=DC3:Ni+Binding+Site+For+Chain+A'>DC3</scene> and <scene name='pdbsite=DC4:Mg+Binding+Site+For+Chain+A'>DC4</scene>
|LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> and <scene name='pdbligand=097:N4-(2,2-DIMETHYL-1-METHYLCARBAMOYL-PROPYL)-2,N1-DIHYDROXY-3-ISOBUTYL-SUCCINAMIDE'>097</scene>
|ACTIVITY=
|GENE=
}}
 
'''CRYSTAL STRUCTURE OF HUMAN ADAMTS-1 CATALYTIC DOMAIN AND CYSTEINE-RICH DOMAIN (COMPLEX-FORM)'''
 


==Overview==
==Overview==
Line 7: Line 16:


==About this Structure==
==About this Structure==
2JIH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=CD:'>CD</scene>, <scene name='pdbligand=NI:'>NI</scene>, <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=097:'>097</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:097+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:097+Binding+Site+For+Chain+B'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Chain+B'>AC4</scene>, <scene name='pdbsite=AC5:Cd+Binding+Site+For+Chain+A'>AC5</scene>, <scene name='pdbsite=AC6:Cd+Binding+Site+For+Chain+A'>AC6</scene>, <scene name='pdbsite=AC7:Ni+Binding+Site+For+Chain+A'>AC7</scene>, <scene name='pdbsite=AC8:Cd+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:Cd+Binding+Site+For+Chain+A'>AC9</scene>, <scene name='pdbsite=BC1:Cd+Binding+Site+For+Chain+B'>BC1</scene>, <scene name='pdbsite=BC2:Ni+Binding+Site+For+Chain+B'>BC2</scene>, <scene name='pdbsite=BC3:Cd+Binding+Site+For+Chain+B'>BC3</scene>, <scene name='pdbsite=BC4:Ni+Binding+Site+For+Chain+B'>BC4</scene>, <scene name='pdbsite=BC5:Ni+Binding+Site+For+Chain+B'>BC5</scene>, <scene name='pdbsite=BC6:Ni+Binding+Site+For+Chain+A'>BC6</scene>, <scene name='pdbsite=BC7:Mg+Binding+Site+For+Chain+A'>BC7</scene>, <scene name='pdbsite=BC8:Ni+Binding+Site+For+Chain+A'>BC8</scene>, <scene name='pdbsite=BC9:Ni+Binding+Site+For+Chain+A'>BC9</scene>, <scene name='pdbsite=CC1:Ni+Binding+Site+For+Chain+A'>CC1</scene>, <scene name='pdbsite=CC2:Ni+Binding+Site+For+Chain+A'>CC2</scene>, <scene name='pdbsite=CC3:Mg+Binding+Site+For+Chain+B'>CC3</scene>, <scene name='pdbsite=CC4:Ni+Binding+Site+For+Chain+B'>CC4</scene>, <scene name='pdbsite=CC7:Na+Binding+Site+For+Chain+A'>CC7</scene>, <scene name='pdbsite=CC8:Na+Binding+Site+For+Chain+A'>CC8</scene>, <scene name='pdbsite=CC9:Na+Binding+Site+For+Chain+A'>CC9</scene>, <scene name='pdbsite=DC1:Na+Binding+Site+For+Chain+B'>DC1</scene>, <scene name='pdbsite=DC2:Na+Binding+Site+For+Chain+B'>DC2</scene>, <scene name='pdbsite=DC3:Ni+Binding+Site+For+Chain+A'>DC3</scene> and <scene name='pdbsite=DC4:Mg+Binding+Site+For+Chain+A'>DC4</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIH OCA].  
2JIH is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIH OCA].  


==Reference==
==Reference==
Crystal structures of human ADAMTS-1 reveal a conserved catalytic domain and a disintegrin-like domain with a fold homologous to cysteine-rich domains., Gerhardt S, Hassall G, Hawtin P, McCall E, Flavell L, Minshull C, Hargreaves D, Ting A, Pauptit RA, Parker AE, Abbott WM, J Mol Biol. 2007 Nov 2;373(4):891-902. Epub 2007 Aug 2. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17897672 17897672]
Crystal structures of human ADAMTS-1 reveal a conserved catalytic domain and a disintegrin-like domain with a fold homologous to cysteine-rich domains., Gerhardt S, Hassall G, Hawtin P, McCall E, Flavell L, Minshull C, Hargreaves D, Ting A, Pauptit RA, Parker AE, Abbott WM, J Mol Biol. 2007 Nov 2;373(4):891-902. Epub 2007 Aug 2. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17897672 17897672]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Single protein]]
Line 31: Line 40:
[[Category: ZN]]
[[Category: ZN]]
[[Category: adamts-1]]
[[Category: adamts-1]]
[[Category: cleavage on pair of basic residues]]
[[Category: cleavage on pair of basic residue]]
[[Category: extracellular matrix]]
[[Category: extracellular matrix]]
[[Category: glycoprotein]]
[[Category: glycoprotein]]
Line 45: Line 54:
[[Category: zymogen]]
[[Category: zymogen]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:03:39 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:42:23 2008''