2qf2: Difference between revisions

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[[Image:2qf2.jpg|left|200px]]<br /><applet load="2qf2" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:2qf2.jpg|left|200px]]
caption="2qf2, resolution 1.65&Aring;" />
 
'''Rat cytosolic PEPCK in complex with oxaloacetic acid and GDP.'''<br />
{{Structure
|PDB= 2qf2 |SIZE=350|CAPTION= <scene name='initialview01'>2qf2</scene>, resolution 1.65&Aring;
|SITE= <scene name='pdbsite=AC1:Mn+Binding+Site+For+Residue+A+624'>AC1</scene>, <scene name='pdbsite=AC2:Mn+Binding+Site+For+Residue+A+623'>AC2</scene>, <scene name='pdbsite=AC3:Mn+Binding+Site+For+Residue+A+625'>AC3</scene>, <scene name='pdbsite=AC4:Mn+Binding+Site+For+Residue+A+626'>AC4</scene>, <scene name='pdbsite=AC5:Na+Binding+Site+For+Residue+A+700'>AC5</scene>, <scene name='pdbsite=AC6:Oaa+Binding+Site+For+Residue+A+701'>AC6</scene>, <scene name='pdbsite=AC7:Mn+Binding+Site+For+Residue+B+623'>AC7</scene>, <scene name='pdbsite=AC8:Mn+Binding+Site+For+Residue+B+624'>AC8</scene>, <scene name='pdbsite=AC9:Mn+Binding+Site+For+Residue+B+626'>AC9</scene>, <scene name='pdbsite=BC1:Na+Binding+Site+For+Residue+B+800'>BC1</scene>, <scene name='pdbsite=BC2:Oaa+Binding+Site+For+Residue+B+801'>BC2</scene>, <scene name='pdbsite=BC3:Gdp+Binding+Site+For+Residue+A+702'>BC3</scene>, <scene name='pdbsite=BC4:Gdp+Binding+Site+For+Residue+A+703'>BC4</scene>, <scene name='pdbsite=BC5:Pyr+Binding+Site+For+Residue+A+4083'>BC5</scene>, <scene name='pdbsite=BC6:Gdp+Binding+Site+For+Residue+B+802'>BC6</scene> and <scene name='pdbsite=BC7:Pyr+Binding+Site+For+Residue+B+4083'>BC7</scene>
|LIGAND= <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=OAA:OXALOACETATE+ION'>OAA</scene>, <scene name='pdbligand=GDP:GUANOSINE-5'-DIPHOSPHATE'>GDP</scene> and <scene name='pdbligand=PYR:PYRUVIC ACID'>PYR</scene>
|ACTIVITY= [http://en.wikipedia.org/wiki/Phosphoenolpyruvate_carboxykinase_(GTP) Phosphoenolpyruvate carboxykinase (GTP)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.32 4.1.1.32]
|GENE= Pck1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus])
}}
 
'''Rat cytosolic PEPCK in complex with oxaloacetic acid and GDP.'''
 


==Overview==
==Overview==
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==About this Structure==
==About this Structure==
2QF2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus] with <scene name='pdbligand=MN:'>MN</scene>, <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=OAA:'>OAA</scene>, <scene name='pdbligand=GDP:'>GDP</scene> and <scene name='pdbligand=PYR:'>PYR</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Phosphoenolpyruvate_carboxykinase_(GTP) Phosphoenolpyruvate carboxykinase (GTP)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.32 4.1.1.32] Known structural/functional Sites: <scene name='pdbsite=AC1:Mn+Binding+Site+For+Residue+A+624'>AC1</scene>, <scene name='pdbsite=AC2:Mn+Binding+Site+For+Residue+A+623'>AC2</scene>, <scene name='pdbsite=AC3:Mn+Binding+Site+For+Residue+A+625'>AC3</scene>, <scene name='pdbsite=AC4:Mn+Binding+Site+For+Residue+A+626'>AC4</scene>, <scene name='pdbsite=AC5:Na+Binding+Site+For+Residue+A+700'>AC5</scene>, <scene name='pdbsite=AC6:Oaa+Binding+Site+For+Residue+A+701'>AC6</scene>, <scene name='pdbsite=AC7:Mn+Binding+Site+For+Residue+B+623'>AC7</scene>, <scene name='pdbsite=AC8:Mn+Binding+Site+For+Residue+B+624'>AC8</scene>, <scene name='pdbsite=AC9:Mn+Binding+Site+For+Residue+B+626'>AC9</scene>, <scene name='pdbsite=BC1:Na+Binding+Site+For+Residue+B+800'>BC1</scene>, <scene name='pdbsite=BC2:Oaa+Binding+Site+For+Residue+B+801'>BC2</scene>, <scene name='pdbsite=BC3:Gdp+Binding+Site+For+Residue+A+702'>BC3</scene>, <scene name='pdbsite=BC4:Gdp+Binding+Site+For+Residue+A+703'>BC4</scene>, <scene name='pdbsite=BC5:Pyr+Binding+Site+For+Residue+A+4083'>BC5</scene>, <scene name='pdbsite=BC6:Gdp+Binding+Site+For+Residue+B+802'>BC6</scene> and <scene name='pdbsite=BC7:Pyr+Binding+Site+For+Residue+B+4083'>BC7</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QF2 OCA].  
2QF2 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QF2 OCA].  


==Reference==
==Reference==
Structures of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid., Sullivan SM, Holyoak T, Biochemistry. 2007 Sep 4;46(35):10078-88. Epub 2007 Aug 9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17685635 17685635]
Structures of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid., Sullivan SM, Holyoak T, Biochemistry. 2007 Sep 4;46(35):10078-88. Epub 2007 Aug 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17685635 17685635]
[[Category: Phosphoenolpyruvate carboxykinase (GTP)]]
[[Category: Phosphoenolpyruvate carboxykinase (GTP)]]
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
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[[Category: phosphoenolpyruvate carboxykinase]]
[[Category: phosphoenolpyruvate carboxykinase]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:39:03 2008''
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:25:11 2008''