2vgd: Difference between revisions

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[[Image:2vgd.jpg|left|200px]]<br /><applet load="2vgd" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:2vgd.jpg|left|200px]]
caption="2vgd, resolution 1.80&Aring;" />
 
'''CRYSTAL STRUCTURE OF ENVIRONMENTAL ISOLATED GH11 IN COMPLEX WITH XYLOBIOSE AND FERULOYL-ARABINO-XYLOTRIOSE'''<br />
{{Structure
|PDB= 2vgd |SIZE=350|CAPTION= <scene name='initialview01'>2vgd</scene>, resolution 1.80&Aring;
|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Xyp+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Xyp+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Xyp+Binding+Site+For+Chain+A'>AC4</scene>, <scene name='pdbsite=AC5:Fx3+Binding+Site+For+Chain+A'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Chain+A'>AC6</scene>, <scene name='pdbsite=AC7:Gol+Binding+Site+For+Chain+A'>AC7</scene>, <scene name='pdbsite=AC8:Gol+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:Gol+Binding+Site+For+Chain+A'>AC9</scene>, <scene name='pdbsite=BC1:Xyp+Binding+Site+For+Chain+A'>BC1</scene> and <scene name='pdbsite=BC2:Xyp+Binding+Site+For+Chain+A'>BC2</scene>
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=FX3:'>FX3</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
|ACTIVITY= [http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8]
|GENE=
}}
 
'''CRYSTAL STRUCTURE OF ENVIRONMENTAL ISOLATED GH11 IN COMPLEX WITH XYLOBIOSE AND FERULOYL-ARABINO-XYLOTRIOSE'''
 


==Overview==
==Overview==
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==About this Structure==
==About this Structure==
2VGD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=FX3:'>FX3</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] Known structural/functional Sites: <scene name='pdbsite=AC1:Na+Binding+Site+For+Chain+A'>AC1</scene>, <scene name='pdbsite=AC2:Xyp+Binding+Site+For+Chain+A'>AC2</scene>, <scene name='pdbsite=AC3:Xyp+Binding+Site+For+Chain+A'>AC3</scene>, <scene name='pdbsite=AC4:Xyp+Binding+Site+For+Chain+A'>AC4</scene>, <scene name='pdbsite=AC5:Fx3+Binding+Site+For+Chain+A'>AC5</scene>, <scene name='pdbsite=AC6:Gol+Binding+Site+For+Chain+A'>AC6</scene>, <scene name='pdbsite=AC7:Gol+Binding+Site+For+Chain+A'>AC7</scene>, <scene name='pdbsite=AC8:Gol+Binding+Site+For+Chain+A'>AC8</scene>, <scene name='pdbsite=AC9:Gol+Binding+Site+For+Chain+A'>AC9</scene>, <scene name='pdbsite=BC1:Xyp+Binding+Site+For+Chain+A'>BC1</scene> and <scene name='pdbsite=BC2:Xyp+Binding+Site+For+Chain+A'>BC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VGD OCA].  
2VGD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VGD OCA].  


==Reference==
==Reference==
Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases., Vardakou M, Dumon C, Murray JW, Christakopoulos P, Weiner DP, Juge N, Lewis RJ, Gilbert HJ, Flint JE, J Mol Biol. 2008 Feb 1;375(5):1293-305. Epub 2007 Nov 12. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18078955 18078955]
Understanding the structural basis for substrate and inhibitor recognition in eukaryotic GH11 xylanases., Vardakou M, Dumon C, Murray JW, Christakopoulos P, Weiner DP, Juge N, Lewis RJ, Gilbert HJ, Flint JE, J Mol Biol. 2008 Feb 1;375(5):1293-305. Epub 2007 Nov 12. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18078955 18078955]
[[Category: Endo-1,4-beta-xylanase]]
[[Category: Endo-1,4-beta-xylanase]]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: xylanase]]
[[Category: xylanase]]


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