2mi0: Difference between revisions

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{{STRUCTURE_2mi0|  PDB=2mi0 | SCENE= }}
==NMR structure of the I-V kissing-loop interaction of the Neurospora VS ribozyme==
===NMR structure of the I-V kissing-loop interaction of the Neurospora VS ribozyme===
<StructureSection load='2mi0' size='340' side='right' caption='[[2mi0]], [[NMR_Ensembles_of_Models | 21 NMR models]]' scene=''>
{{ABSTRACT_PUBMED_24325625}}
== Structural highlights ==
<table><tr><td colspan='2'>[[2mi0]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MI0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2MI0 FirstGlance]. <br>
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2mi0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2mi0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2mi0 RCSB], [http://www.ebi.ac.uk/pdbsum/2mi0 PDBsum]</span></td></tr>
</table>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Substrate recognition by the Neurospora Varkud satellite ribozyme depends on the formation of a magnesium-dependent kissing-loop interaction between the stem-loop I (SLI) substrate and stem-loop V (SLV) of the catalytic domain. From mutagenesis studies, it has been established that this I/V kissing-loop interaction involves three Watson-Crick base pairs and is associated with a structural rearrangement of the SLI substrate that facilitates catalysis. Here, we report the NMR structural characterization of this I/V kissing-loop using isolated stem-loops. NMR studies were performed on different SLI/SLV complexes containing a common SLV and shiftable, preshifted, or double-stranded SLI variants. These studies confirm the presence of three Watson-Crick base pairs at the kissing-loop junction and provide evidence for the structural rearrangement of shiftable SLI variants upon SLV binding. NMR structure determination of an SLI/SLV complex demonstrates that both the SLI and SLV loops adopt U-turn structures, which facilitates intermolecular Watson-Crick base pairing. Several other interactions at the I/V interface, including base triples and base stacking, help create a continuously stacked structure. These NMR studies provide a structural basis to understand the stability of the I/V kissing-loop interaction and lead us to propose a kinetic model for substrate activation in the VS ribozyme.


==About this Structure==
Structural insights into substrate recognition by the neurospora varkud satellite ribozyme: importance of u-turns at the kissing-loop junction.,Bouchard P, Legault P Biochemistry. 2014 Jan 14;53(1):258-69. doi: 10.1021/bi401491g. Epub 2013 Dec 17. PMID:24325625<ref>PMID:24325625</ref>
[[2mi0]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2MI0 OCA].


==Reference==
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
<ref group="xtra">PMID:024325625</ref><references group="xtra"/><references/>
</div>
[[Category: Bouchard, P.]]
== References ==
[[Category: Legault, P.]]
<references/>
__TOC__
</StructureSection>
[[Category: Bouchard, P]]
[[Category: Legault, P]]
[[Category: Kissing-loop interaction]]
[[Category: Kissing-loop interaction]]
[[Category: Neurospora vs ribozyme]]
[[Category: Neurospora vs ribozyme]]
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