4k4o: Difference between revisions

Line 1:

~~{{STRUCTURE_4k4o| PDB=4k4o | SCENE= }}~~

==The DNA Gyrase B ATP binding domain of Enterococcus faecalis in complex with a small molecule inhibitor==

===The DNA Gyrase B ATP binding domain of Enterococcus faecalis in complex with a small molecule inhibitor===

== Structural highlights ==

<table><tr><td colspan='2'>[[4k4o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Entfa Entfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K4O OCA]. For a guided tour on the structure components use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4K4O FirstGlance].

</td></tr><tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat"><scene name='pdbligand=DOO:6-FLUORO-4-[(3AR,6AR)-HEXAHYDROPYRROLO[3,4-B]PYRROL-5(1H)-YL]-N-METHYL-2-[(2-METHYLPYRIMIDIN-5-YL)OXY]-9H-PYRIMIDO[4,5-B]INDOL-8-AMINE'>DOO</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>

<tr id='gene'><td class="sblockLbl">[[Gene|Gene:]]</td><td class="sblockDat">EF_0005, gyrB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>

<tr id='activity'><td class="sblockLbl">Activity:</td><td class="sblockDat">[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4k4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4k4o RCSB], [http://www.ebi.ac.uk/pdbsum/4k4o PDBsum]</td></tr>

</table>

==~~Function~~==

==See Also==

[[~~http://www.uniprot.org/uniprot/Q839Z1_ENTFA Q839Z1_ENTFA~~]] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity).[HAMAP-Rule:MF_01898]

*[[Gyrase|Gyrase]]

__TOC__

~~==About this Structure==~~

</StructureSection>

[[~~4k4o~~]] ~~is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K4O OCA].~~

[[Category: Entfa]]

[[Category: Akers-Rodriguez, S.]]

[[Category: Akers-Rodriguez, S]]

[[Category: Bensen, D C.]]

[[Category: Bensen, D C]]

[[Category: Lam, T.]]

[[Category: Lam, T]]

[[Category: Tari, L W.]]

[[Category: Tari, L W]]

[[Category: Atp-binding]]

[[Category: Atp-binding domain]]

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@@ Line 1: / Line 1: @@
-{{STRUCTURE_4k4o|  PDB=4k4o  |  SCENE=  }}
+==The DNA Gyrase B ATP binding domain of Enterococcus faecalis in complex with a small molecule inhibitor==
-===The DNA Gyrase B ATP binding domain of Enterococcus faecalis in complex with a small molecule inhibitor===
+<StructureSection load='4k4o' size='340' side='right' caption='[[4k4o]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4k4o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Entfa Entfa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K4O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4K4O FirstGlance]. <br>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DOO:6-FLUORO-4-[(3AR,6AR)-HEXAHYDROPYRROLO[3,4-B]PYRROL-5(1H)-YL]-N-METHYL-2-[(2-METHYLPYRIMIDIN-5-YL)OXY]-9H-PYRIMIDO[4,5-B]INDOL-8-AMINE'>DOO</scene>, <scene name='pdbligand=TBU:TERTIARY-BUTYL+ALCOHOL'>TBU</scene></td></tr>
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">EF_0005, gyrB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=226185 ENTFA])</td></tr>
+<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4k4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k4o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4k4o RCSB], [http://www.ebi.ac.uk/pdbsum/4k4o PDBsum]</span></td></tr>
+</table>
-==Function==
+==See Also==
-[[http://www.uniprot.org/uniprot/Q839Z1_ENTFA Q839Z1_ENTFA]] DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity).[HAMAP-Rule:MF_01898]
+*[[Gyrase|Gyrase]]
+__TOC__
-==About this Structure==
+</StructureSection>
-[[4k4o]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K4O OCA].
+[[Category: Entfa]]
-[[Category: Akers-Rodriguez, S.]]
+[[Category: Akers-Rodriguez, S]]
-[[Category: Bensen, D C.]]
+[[Category: Bensen, D C]]
-[[Category: Lam, T.]]
+[[Category: Lam, T]]
-[[Category: Tari, L W.]]
+[[Category: Tari, L W]]
 [[Category: Atp-binding]]
 [[Category: Atp-binding domain]]