3b8x: Difference between revisions

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[[Image:3b8x.gif|left|200px]]<br /><applet load="3b8x" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:3b8x.gif|left|200px]]
caption="3b8x, resolution 1.70&Aring;" />
 
'''Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (ColD) H188N mutant with bound GDP-perosamine'''<br />
{{Structure
|PDB= 3b8x |SIZE=350|CAPTION= <scene name='initialview01'>3b8x</scene>, resolution 1.70&Aring;
|SITE= <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+B+666'>AC1</scene>, <scene name='pdbsite=AC2:Na+Binding+Site+For+Residue+B+667'>AC2</scene>, <scene name='pdbsite=AC3:Na+Binding+Site+For+Residue+B+668'>AC3</scene>, <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+A+669'>AC4</scene>, <scene name='pdbsite=AC5:Na+Binding+Site+For+Residue+B+670'>AC5</scene>, <scene name='pdbsite=AC6:Na+Binding+Site+For+Residue+A+671'>AC6</scene>, <scene name='pdbsite=AC7:Na+Binding+Site+For+Residue+A+672'>AC7</scene>, <scene name='pdbsite=AC8:Na+Binding+Site+For+Residue+A+673'>AC8</scene>, <scene name='pdbsite=AC9:G4m+Binding+Site+For+Residue+A+500'>AC9</scene>, <scene name='pdbsite=BC1:G4m+Binding+Site+For+Residue+B+500'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+A+674'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+A+675'>BC3</scene> and <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+A+676'>BC4</scene>
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=G4M:[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl+(2R,3S,4S,5S,6R)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-6-methyltetrahydro-2H-pyran-2-yl+dihydrogen+diphosphate'>G4M</scene> and <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
|ACTIVITY=
|GENE= wbdK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
}}
 
'''Crystal structure of GDP-4-keto-6-deoxymannose-3-dehydratase (ColD) H188N mutant with bound GDP-perosamine'''
 


==Overview==
==Overview==
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==About this Structure==
==About this Structure==
3B8X is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=G4M:'>G4M</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Na+Binding+Site+For+Residue+B+666'>AC1</scene>, <scene name='pdbsite=AC2:Na+Binding+Site+For+Residue+B+667'>AC2</scene>, <scene name='pdbsite=AC3:Na+Binding+Site+For+Residue+B+668'>AC3</scene>, <scene name='pdbsite=AC4:Na+Binding+Site+For+Residue+A+669'>AC4</scene>, <scene name='pdbsite=AC5:Na+Binding+Site+For+Residue+B+670'>AC5</scene>, <scene name='pdbsite=AC6:Na+Binding+Site+For+Residue+A+671'>AC6</scene>, <scene name='pdbsite=AC7:Na+Binding+Site+For+Residue+A+672'>AC7</scene>, <scene name='pdbsite=AC8:Na+Binding+Site+For+Residue+A+673'>AC8</scene>, <scene name='pdbsite=AC9:G4m+Binding+Site+For+Residue+A+500'>AC9</scene>, <scene name='pdbsite=BC1:G4m+Binding+Site+For+Residue+B+500'>BC1</scene>, <scene name='pdbsite=BC2:Edo+Binding+Site+For+Residue+A+674'>BC2</scene>, <scene name='pdbsite=BC3:Edo+Binding+Site+For+Residue+A+675'>BC3</scene> and <scene name='pdbsite=BC4:Edo+Binding+Site+For+Residue+A+676'>BC4</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B8X OCA].  
3B8X is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B8X OCA].  


==Reference==
==Reference==
GDP-4-Keto-6-deoxy-D-mannose 3-Dehydratase, Accommodating a Sugar Substrate in the Active Site., Cook PD, Holden HM, J Biol Chem. 2008 Feb 15;283(7):4295-303. Epub 2007 Nov 28. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18045869 18045869]
GDP-4-Keto-6-deoxy-D-mannose 3-Dehydratase, Accommodating a Sugar Substrate in the Active Site., Cook PD, Holden HM, J Biol Chem. 2008 Feb 15;283(7):4295-303. Epub 2007 Nov 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18045869 18045869]
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: x-ray]]
[[Category: x-ray]]


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