422d: Difference between revisions
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[[Image:422d.gif|left|200px]] | [[Image:422d.gif|left|200px]] | ||
'''5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'''' | {{Structure | ||
|PDB= 422d |SIZE=350|CAPTION= <scene name='initialview01'>422d</scene>, resolution 2.60Å | |||
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'''5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'''' | |||
==Overview== | ==Overview== | ||
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==About this Structure== | ==About this Structure== | ||
422D is a [ | 422D is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=422D OCA]. | ||
==Reference== | ==Reference== | ||
Structure of the dodecamer r(GAUCACUUCGGU) with four 5'-overhang nucleotides., Eswaramoorthy S, Rao ST, Pan B, Sundaralingam M, Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):8-12. Epub 2003 Dec, 18. PMID:[http:// | Structure of the dodecamer r(GAUCACUUCGGU) with four 5'-overhang nucleotides., Eswaramoorthy S, Rao ST, Pan B, Sundaralingam M, Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):8-12. Epub 2003 Dec, 18. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14684886 14684886] | ||
[[Category: Protein complex]] | [[Category: Protein complex]] | ||
[[Category: Eswaramoorthy, S.]] | [[Category: Eswaramoorthy, S.]] | ||
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[[Category: double helix]] | [[Category: double helix]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:08:06 2008'' | ||
Revision as of 17:08, 20 March 2008
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| 422d, resolution 2.60Å | |||||||||||||
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| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
5'-R(*GP*AP*UP*CP*AP*CP*UP*UP*CP*GP*GP*U)-3'
Overview
The crystal structure of an RNA dodecamer, r(GAUCACUUCGGU), was solved at 2.6 A resolution by the molecular-replacement method and refined to an R(work) of 18.8% (R(free) = 22.8%) using 2494 reflections. The dodecamer crystallized in the monoclinic space group C2, with unit-cell parameters a = 71.34, b = 39.98, c = 32.47 A, beta = 104.7 degrees and two independent strands in the asymmetric unit. The dodecamer adopts an octamer duplex structure with four 5'-overhang residues (G1A2U3C4), which form Watson-Crick base pairs with another four 5'-overhang residues of a symmetry-related duplex. The octamer duplex (ACUUCGGU) contains at its center four mismatched base pairs flanked by two Watson-Crick base pairs. The mismatched bases form two G.U wobble base pairs at the ends and two U.C base pairs at the center, with one base-base hydrogen bond N4(C).O4(U) and a water bridge connecting the N(3) of the cytosine and uridine. The present study reinforces the concept of the stability of the conformation of UUCG in RNA double-helical structures.
About this Structure
422D is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Structure of the dodecamer r(GAUCACUUCGGU) with four 5'-overhang nucleotides., Eswaramoorthy S, Rao ST, Pan B, Sundaralingam M, Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):8-12. Epub 2003 Dec, 18. PMID:14684886
Page seeded by OCA on Thu Mar 20 19:08:06 2008
