User:Wayne Decatur/Sequence analysis tools: Difference between revisions
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*[http://doua.prabi.fr/software/cap3 CAP3 Sequence Assembly Program] - online, webserver for making contigs from DNA sequences. "form allows you to assemble a set of contiguous sequences (contigs) with the CAP3 program. | *[http://doua.prabi.fr/software/cap3 CAP3 Sequence Assembly Program] - online, webserver for making contigs from DNA sequences. "form allows you to assemble a set of contiguous sequences (contigs) with the CAP3 program. | ||
* [http://nucleobytes.com/index.php/ Nucleobytes] - DNA editor and [http://nucleobytes.com/index.php/4peaks 4peaks] sequence chromatogram viewer along with other mac software | * [http://nucleobytes.com/index.php/ Nucleobytes] - DNA editor and [http://nucleobytes.com/index.php/4peaks 4peaks] sequence chromatogram viewer along with other mac software | ||
*[http://pax-db.org/#!home PaxDb]: Protein Abundance Across Organisms | |||
Some sequence analysis but mostly other | Some sequence analysis but mostly other | ||
*[http://www.biocyc.org/ BioCyc Database Collection] - "BioCyc is a collection of 3530 Pathway/Genome Databases (PGDBs), with tools for understanding their data. Cellular Overview image generated by Pathway Tools. Explore Metabolic Maps for Thousands of Organisms. RouteSearch: Search for Paths through the Metabolic Network. Cross-Organism Search form generated by Pathway Tools. New: Search All of BioCyc for Genes, Proteins, Pathways. Search all of BioCyc or designated taxonomic groups for named genes, proteins, metabolites, pathways. Multiple Sequence Alignment results generated by Pathway Tools using MUSCLE. PatMatch query and results by Pathway Tools. SmartTable display generated by Pathway Tools. Metabolomics Data Analysis. Cellular Overview Omics Viewer image generated by Pathway Tools. Gene Expression Data Analysis. Multi-Genome Browser. Comparative Genome Analysis." | *[http://www.biocyc.org/ BioCyc Database Collection] - "BioCyc is a collection of 3530 Pathway/Genome Databases (PGDBs), with tools for understanding their data. Cellular Overview image generated by Pathway Tools. Explore Metabolic Maps for Thousands of Organisms. RouteSearch: Search for Paths through the Metabolic Network. Cross-Organism Search form generated by Pathway Tools. New: Search All of BioCyc for Genes, Proteins, Pathways. Search all of BioCyc or designated taxonomic groups for named genes, proteins, metabolites, pathways. Multiple Sequence Alignment results generated by Pathway Tools using MUSCLE. PatMatch query and results by Pathway Tools. SmartTable display generated by Pathway Tools. Metabolomics Data Analysis. Cellular Overview Omics Viewer image generated by Pathway Tools. Gene Expression Data Analysis. Multi-Genome Browser. Comparative Genome Analysis." | ||
