2rie: Difference between revisions

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[[Image:2rie.jpg|left|200px]]<br /><applet load="2rie" size="350" color="white" frame="true" align="right" spinBox="true"
[[Image:2rie.jpg|left|200px]]
caption="2rie, resolution 1.600&Aring;" />
 
'''Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with 2-deoxy-L-glycero-D-manno-heptose'''<br />
{{Structure
|PDB= 2rie |SIZE=350|CAPTION= <scene name='initialview01'>2rie</scene>, resolution 1.600&Aring;
|SITE= <scene name='pdbsite=AC1:293+Binding+Site+For+Residue+A+356'>AC1</scene>, <scene name='pdbsite=AC2:293+Binding+Site+For+Residue+B+356'>AC2</scene>, <scene name='pdbsite=AC3:293+Binding+Site+For+Residue+C+356'>AC3</scene>, <scene name='pdbsite=AC4:Ca+Binding+Site+For+Residue+A+401'>AC4</scene>, <scene name='pdbsite=AC5:Ca+Binding+Site+For+Residue+A+402'>AC5</scene>, <scene name='pdbsite=AC6:Ca+Binding+Site+For+Residue+A+403'>AC6</scene>, <scene name='pdbsite=AC7:Ca+Binding+Site+For+Residue+B+401'>AC7</scene>, <scene name='pdbsite=AC8:Ca+Binding+Site+For+Residue+B+402'>AC8</scene>, <scene name='pdbsite=AC9:Ca+Binding+Site+For+Residue+B+403'>AC9</scene>, <scene name='pdbsite=BC1:Ca+Binding+Site+For+Residue+C+401'>BC1</scene>, <scene name='pdbsite=BC2:Ca+Binding+Site+For+Residue+C+402'>BC2</scene> and <scene name='pdbsite=BC3:Ca+Binding+Site+For+Residue+C+403'>BC3</scene>
|LIGAND= <scene name='pdbligand=293:'>293</scene> and <scene name='pdbligand=CA:CALCIUM ION'>CA</scene>
|ACTIVITY=
|GENE= SFTPD, PSPD, SFTP4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
}}
 
'''Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with 2-deoxy-L-glycero-D-manno-heptose'''
 


==Overview==
==Overview==
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==About this Structure==
==About this Structure==
2RIE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=293:'>293</scene> and <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:293+Binding+Site+For+Residue+A+356'>AC1</scene>, <scene name='pdbsite=AC2:293+Binding+Site+For+Residue+B+356'>AC2</scene>, <scene name='pdbsite=AC3:293+Binding+Site+For+Residue+C+356'>AC3</scene>, <scene name='pdbsite=AC4:Ca+Binding+Site+For+Residue+A+401'>AC4</scene>, <scene name='pdbsite=AC5:Ca+Binding+Site+For+Residue+A+402'>AC5</scene>, <scene name='pdbsite=AC6:Ca+Binding+Site+For+Residue+A+403'>AC6</scene>, <scene name='pdbsite=AC7:Ca+Binding+Site+For+Residue+B+401'>AC7</scene>, <scene name='pdbsite=AC8:Ca+Binding+Site+For+Residue+B+402'>AC8</scene>, <scene name='pdbsite=AC9:Ca+Binding+Site+For+Residue+B+403'>AC9</scene>, <scene name='pdbsite=BC1:Ca+Binding+Site+For+Residue+C+401'>BC1</scene>, <scene name='pdbsite=BC2:Ca+Binding+Site+For+Residue+C+402'>BC2</scene> and <scene name='pdbsite=BC3:Ca+Binding+Site+For+Residue+C+403'>BC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RIE OCA].  
2RIE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RIE OCA].  


==Reference==
==Reference==
Recognition of heptoses and the inner core of bacterial lipopolysaccharides by surfactant protein d., Wang H, Head J, Kosma P, Brade H, Muller-Loennies S, Sheikh S, McDonald B, Smith K, Cafarella T, Seaton B, Crouch E, Biochemistry. 2008 Jan 15;47(2):710-20. Epub 2007 Dec 20. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18092821 18092821]
Recognition of heptoses and the inner core of bacterial lipopolysaccharides by surfactant protein d., Wang H, Head J, Kosma P, Brade H, Muller-Loennies S, Sheikh S, McDonald B, Smith K, Cafarella T, Seaton B, Crouch E, Biochemistry. 2008 Jan 15;47(2):710-20. Epub 2007 Dec 20. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18092821 18092821]
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Single protein]]
[[Category: Single protein]]
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[[Category: surfactant protein; carbohydrate recognition; domain trimeric]]
[[Category: surfactant protein; carbohydrate recognition; domain trimeric]]


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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:36:24 2008''
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