196d: Difference between revisions
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|PDB= 196d |SIZE=350|CAPTION= <scene name='initialview01'>196d</scene>, resolution 1.700Å | |PDB= 196d |SIZE=350|CAPTION= <scene name='initialview01'>196d</scene>, resolution 1.700Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=CA:CALCIUM ION'>CA</scene> | |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=196d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=196d OCA], [http://www.ebi.ac.uk/pdbsum/196d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=196d RCSB]</span> | |||
}} | }} | ||
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[[Category: Goodsell, D S.]] | [[Category: Goodsell, D S.]] | ||
[[Category: Grzeskowiak, K.]] | [[Category: Grzeskowiak, K.]] | ||
[[Category: b-dna]] | [[Category: b-dna]] | ||
[[Category: double helix]] | [[Category: double helix]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:30:01 2008'' | ||
Revision as of 15:30, 30 March 2008
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| 196d, resolution 1.700Å | |||||||||||||
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| Ligands: | CA, DA, DC, DG, DT | ||||||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
CRYSTAL STRUCTURE OF C-T-C-T-C-G-A-G-A-G: IMPLICATIONS FOR THE STRUCTURE OF THE HOLLIDAY JUNCTION
Overview
The structure of the B-DNA decamer of sequence C-T-C-T-C-G-A-G-A-G shows a crossed arrangement of helices in the C2 crystal lattice. This is the fourth example of a crossed arrangement of B-DNA oligomers in a crystal, and in spite of the fact that each of these four crystallizes in a different lattice, all have nearly identical structures at the crossing contact. This ubiquitous crossing arrangement may be used to generate a structure for the Holliday junction that is fully consistent with the available physical data.
About this Structure
196D is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
Crystal structure of C-T-C-T-C-G-A-G-A-G. Implications for the structure of the Holliday junction., Goodsell DS, Grzeskowiak K, Dickerson RE, Biochemistry. 1995 Jan 24;34(3):1022-9. PMID:7827018
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