1a3i: Difference between revisions
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|PDB= 1a3i |SIZE=350|CAPTION= <scene name='initialview01'>1a3i</scene>, resolution 1.97Å | |PDB= 1a3i |SIZE=350|CAPTION= <scene name='initialview01'>1a3i</scene>, resolution 1.97Å | ||
|SITE= | |SITE= | ||
|LIGAND= <scene name='pdbligand=ACY:ACETIC ACID'>ACY</scene> | |LIGAND= <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene> | ||
|ACTIVITY= | |ACTIVITY= | ||
|GENE= | |GENE= | ||
|DOMAIN= | |||
|RELATEDENTRY= | |||
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1a3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a3i OCA], [http://www.ebi.ac.uk/pdbsum/1a3i PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1a3i RCSB]</span> | |||
}} | }} | ||
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[[Category: Vitagliano, L.]] | [[Category: Vitagliano, L.]] | ||
[[Category: Zagari, A.]] | [[Category: Zagari, A.]] | ||
[[Category: collagen]] | [[Category: collagen]] | ||
[[Category: extracellular matrix]] | [[Category: extracellular matrix]] | ||
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 18:32:28 2008'' | ||
Revision as of 15:32, 30 March 2008
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| 1a3i, resolution 1.97Å | |||||||||||||
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| Ligands: | ACY | ||||||||||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||||||||||
| Coordinates: | save as pdb, mmCIF, xml | ||||||||||||
X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)
Overview
The crystal structure of the triple-helical peptide (Pro-Pro-Gly)10 has been re-determined to obtain a more accurate description for this widely studied collagen model and to provide a comparison with the recent high-resolution crystal structure of a collagen-like peptide containing Pro-Hyp-Gly regions. This structure demonstrated that hydroxyproline participates extensively in a repetitive hydrogen-bonded assembly between the peptide and the solvent molecules. Two separate structural studies of the peptide (Pro-Pro-Gly)10 were performed with different crystallization conditions, data collection temperatures, and X-ray sources. The polymer-like structure of one triple-helical repeat of Pro-Pro-Gly has been determined to 2.0 A resolution in one case and 1.7 A resolution in the other. The solvent structures of the two peptides were independently determined specifically for validation purposes. The two structures display a reverse chain trace compared with the original structure determination. In comparison with the Hyp-containing peptide, the two Pro-Pro-Gly structures demonstrate very similar molecular conformation and analogous hydration patterns involving carbonyl groups, but have different crystal packing. This difference in crystal packing indicates that the involvement of hydroxyproline in an extended hydration network is critical for the lateral assembly and supermolecular structure of collagen.
About this Structure
1A3I is a Protein complex structure of sequences from [1]. Full crystallographic information is available from OCA.
Reference
X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly)., Kramer RZ, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, Zagari A, Berman HM, J Mol Biol. 1998 Jul 24;280(4):623-38. PMID:9677293
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