3lmw: Difference between revisions
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[3lmw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Altfo Altfo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LMW FirstGlance]. <br> | <table><tr><td colspan='2'>[[3lmw]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Altfo Altfo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LMW FirstGlance]. <br> | ||
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>< | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr> | ||
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1h80|1h80]], [[1ktw|1ktw]]</td></tr> | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1h80|1h80]], [[1ktw|1ktw]]</td></tr> | ||
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cgiA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=116059 ALTFO])</td></tr> | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cgiA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=116059 ALTFO])</td></tr> | ||
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Iota-carrageenase Iota-carrageenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.157 3.2.1.157] </span></td></tr> | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Iota-carrageenase Iota-carrageenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.157 3.2.1.157] </span></td></tr> | ||
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lmw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lmw RCSB], [http://www.ebi.ac.uk/pdbsum/3lmw PDBsum]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lmw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3lmw RCSB], [http://www.ebi.ac.uk/pdbsum/3lmw PDBsum]</span></td></tr> | ||
<table> | </table> | ||
== Function == | |||
[[http://www.uniprot.org/uniprot/CGIA_ALTFO CGIA_ALTFO]] Hydrolyzes iota-carrageenans, sulfated 1,3-alpha-1,4-beta galactans from red algal cell walls, with an inversion of anomeric configuration. Also active against hybrid iota-/nu-carrageenan, not active against kappa- or lambda-carrageenans.<ref>PMID:10934194</ref> <ref>PMID:20227066</ref> [UniProtKB:Q9F284] | |||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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Identification of catalytic residues and mechanistic analysis of family GH82 iota-carrageenases.,Rebuffet E, Barbeyron T, Jeudy A, Jam M, Czjzek M, Michel G Biochemistry. 2010 Aug 3. PMID:20681629<ref>PMID:20681629</ref> | Identification of catalytic residues and mechanistic analysis of family GH82 iota-carrageenases.,Rebuffet E, Barbeyron T, Jeudy A, Jam M, Czjzek M, Michel G Biochemistry. 2010 Aug 3. PMID:20681629<ref>PMID:20681629</ref> | ||
From | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
== References == | == References == | ||
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[[Category: Altfo]] | [[Category: Altfo]] | ||
[[Category: Iota-carrageenase]] | [[Category: Iota-carrageenase]] | ||
[[Category: Barbeyron, T | [[Category: Barbeyron, T]] | ||
[[Category: Czjzek, M | [[Category: Czjzek, M]] | ||
[[Category: Jeudy, A | [[Category: Jeudy, A]] | ||
[[Category: Michel, G | [[Category: Michel, G]] | ||
[[Category: Rebuffet, E | [[Category: Rebuffet, E]] | ||
[[Category: Beta-helix fold]] | [[Category: Beta-helix fold]] | ||
[[Category: Family gh82]] | [[Category: Family gh82]] | ||
[[Category: Glycoside hydrolase]] | [[Category: Glycoside hydrolase]] | ||
[[Category: Hydrolase]] | [[Category: Hydrolase]] | ||
[[Category: Marine bacterial enzyme]] | [[Category: Marine bacterial enzyme]] | ||
